RNA–Protein interactions for RNA: ENST00000533806.5

VPS28-216, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 650 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-216ENST00000533806 MLLT1Q03111 559 aaPredicted RBP15.13■□□□□ 0.01
VPS28-216ENST00000533806 CDC37Q16543 378 aaPredicted RBP15.13■□□□□ 0.01
VPS28-216ENST00000533806 QRICH1Q2TAL8 776 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 FBXL16Q8N461 479 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 LRRC2Q9BYS8 371 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 NRBP1Q9UHY1 535 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 OGDHLQ9ULD0 1010 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 PFASO15067 1338 aa15.13■□□□□ 0.01
VPS28-216ENST00000533806 PPP1R11O60927 126 aaPredicted RBP15.12■□□□□ 0.01
VPS28-216ENST00000533806 SNAI1O95863 264 aaPredicted RBP15.12■□□□□ 0.01
VPS28-216ENST00000533806 HMGB1P09429 215 aaKnown RBP15.12■□□□□ 0.01
VPS28-216ENST00000533806 SMARCA1P28370 1054 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 PRAMEF19Q5SWL8 479 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 RGS22Q8NE09 1264 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 MYL10Q9BUA6 226 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 MAF1Q9H063 256 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 SYNGAP1Q96PV0 1343 aa15.12■□□□□ 0.01
VPS28-216ENST00000533806 POTEB2H3BUK9 544 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 ZBTB5O15062 677 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 ZNF865P0CJ78 1059 aaPredicted RBP15.11■□□□□ 0.01
VPS28-216ENST00000533806 TCEANC2Q96MN5 208 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 AGXT2Q9BYV1 514 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 VAT1LQ9HCJ6 419 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 BRPF3Q9ULD4 1205 aa15.11■□□□□ 0.01
VPS28-216ENST00000533806 CCDC69A6NI79 296 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 OPLAHO14841 1288 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 SEPT4O43236 478 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 TFRCP02786 760 aaKnown RBP15.1■□□□□ 0.01
VPS28-216ENST00000533806 CPA1P15085 419 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 GHRHRQ02643 423 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 BAATQ14032 418 aaPredicted RBP15.1■□□□□ 0.01
VPS28-216ENST00000533806 APOA5Q6Q788 366 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 FBXO11Q86XK2 927 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 ANKLE1Q8NAG6 615 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 MORC4Q8TE76 937 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 JAKMIP1Q96N16 626 aaKnown RBP15.1■□□□□ 0.01
VPS28-216ENST00000533806 SPZ1Q9BXG8 430 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 KATNBL1Q9H079 304 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 DDX20Q9UHI6 824 aaKnown RBP15.1■□□□□ 0.01
VPS28-216ENST00000533806 SLC12A7Q9Y666 1083 aa15.1■□□□□ 0.01
VPS28-216ENST00000533806 ZNFX1Q9P2E3 1918 aaKnown RBP15.09■□□□□ 0.01
VPS28-216ENST00000533806 SMCHD1A6NHR9 2005 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 MSCO60682 206 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 CALM1P0DP23 149 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 CALM2P0DP24 149 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 CALM3P0DP25 149 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 KIF5BP33176 963 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 USH1GQ495M9 461 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 NSMFQ6X4W1 530 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 SLC30A10Q6XR72 485 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 NFXL1Q6ZNB6 911 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 CCDC144CPQ8IYA2 1237 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 SRBD1Q8N5C6 995 aaKnown RBP15.09■□□□□ 0.01
VPS28-216ENST00000533806 FANCBQ8NB91 859 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 NUP133Q8WUM0 1156 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 TBC1D5Q92609 795 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 IL17RAQ96F46 866 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 PURBQ96QR8 312 aaKnown RBP15.09■□□□□ 0.01
VPS28-216ENST00000533806 PIGSQ96S52 555 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 ZSWIM6Q9HCJ5 1215 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 ABCB11O95342 1321 aa15.09■□□□□ 0.01
VPS28-216ENST00000533806 PNMA6FA0A0J9YX94 578 aa15.08■□□□□ 0
VPS28-216ENST00000533806 PLEKHA8P1O95397 391 aa15.08■□□□□ 0
VPS28-216ENST00000533806 RXRAP19793 462 aa15.08■□□□□ 0
VPS28-216ENST00000533806 RPS6KB1P23443 525 aa15.08■□□□□ 0
VPS28-216ENST00000533806 RPS6P62753 249 aaKnown RBP15.08■□□□□ 0
VPS28-216ENST00000533806 FUT2Q10981 343 aa15.08■□□□□ 0
VPS28-216ENST00000533806 RNF207Q6ZRF8 634 aa15.08■□□□□ 0
VPS28-216ENST00000533806 ARMCX2Q7L311 632 aa15.08■□□□□ 0
VPS28-216ENST00000533806 CTCFLQ8NI51 663 aaPredicted RBP15.08■□□□□ 0
VPS28-216ENST00000533806 LZTS2Q9BRK4 669 aa15.08■□□□□ 0
VPS28-216ENST00000533806 AMNQ9BXJ7 453 aa15.08■□□□□ 0
VPS28-216ENST00000533806 TM6SF1Q9BZW5 370 aa15.08■□□□□ 0
VPS28-216ENST00000533806 FAM217BQ9NTX9 383 aaPredicted RBP15.08■□□□□ 0
VPS28-216ENST00000533806 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.08■□□□□ 0
VPS28-216ENST00000533806 LOC102724159A0A0B4J2E5 919 aa15.07■□□□□ 0
VPS28-216ENST00000533806 DHX16O60231 1041 aaKnown RBP15.07■□□□□ 0
VPS28-216ENST00000533806 FARP2O94887 1054 aaPredicted RBP15.07■□□□□ 0
VPS28-216ENST00000533806 SEC24BO95487 1268 aa15.07■□□□□ 0
VPS28-216ENST00000533806 COL6A1P12109 1028 aa15.07■□□□□ 0
VPS28-216ENST00000533806 PSMA5P28066 241 aa15.07■□□□□ 0
VPS28-216ENST00000533806 GNAQP50148 359 aa15.07■□□□□ 0
VPS28-216ENST00000533806 RCAN1P53805 252 aa15.07■□□□□ 0
VPS28-216ENST00000533806 EVCP57679 992 aa15.07■□□□□ 0
VPS28-216ENST00000533806 ACVR2BQ13705 512 aa15.07■□□□□ 0
VPS28-216ENST00000533806 PWP2Q15269 919 aaKnown RBP15.07■□□□□ 0
VPS28-216ENST00000533806 BLOC1S2Q6QNY1 142 aa15.07■□□□□ 0
VPS28-216ENST00000533806 TMTC3Q6ZXV5 915 aa15.07■□□□□ 0
VPS28-216ENST00000533806 ABHD16BQ9H3Z7 469 aa15.07■□□□□ 0
VPS28-216ENST00000533806 CNPY2Q9Y2B0 182 aa15.07■□□□□ 0
VPS28-216ENST00000533806 MRPL11Q9Y3B7 192 aaKnown RBP15.07■□□□□ 0
VPS28-216ENST00000533806 ASB14A6NK59 587 aa15.06■□□□□ 0
VPS28-216ENST00000533806 CASTP20810 708 aaKnown RBP15.06■□□□□ 0
VPS28-216ENST00000533806 EDNRBP24530 442 aa15.06■□□□□ 0
VPS28-216ENST00000533806 CNGA1P29973 690 aa15.06■□□□□ 0
VPS28-216ENST00000533806 HSD17B4P51659 736 aa15.06■□□□□ 0
VPS28-216ENST00000533806 Q6ZUG5 572 aa15.06■□□□□ 0
VPS28-216ENST00000533806 RUFY3Q7L099 469 aa15.06■□□□□ 0
VPS28-216ENST00000533806 RAB11FIP4Q86YS3 637 aa15.06■□□□□ 0
VPS28-216ENST00000533806 DIS3LQ8TF46 1054 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms