RNA–Protein interactions for RNA: ENST00000533643.1

COMMD9-208, Transcript of COMM domain containing 9, human

TSL 2

Gene COMMD9, Length 580 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD9-208	ENST00000533643	SH3GLB2	Q9NR46	395 aa		13.74	□□□□□ -0.21
COMMD9-208	ENST00000533643	HOMER2	Q9NSB8	354 aa		13.74	□□□□□ -0.21
COMMD9-208	ENST00000533643	GJB4	Q9NTQ9	266 aa		13.74	□□□□□ -0.21
COMMD9-208	ENST00000533643	VPS54	Q9P1Q0	977 aa		13.74	□□□□□ -0.21
COMMD9-208	ENST00000533643	SLC25A27	O95847	323 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	FOSB	P53539	338 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	NAPA	P54920	295 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	MAP2K1	Q02750	393 aa	Predicted RBP	13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	MUM1L1	Q5H9M0	696 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	PORCN	Q9H237	461 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	RNF146	Q9NTX7	359 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	SAGE1	Q9NXZ1	904 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	MRPL11	Q9Y3B7	192 aa	Known RBP	13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	KIF3A	Q9Y496	699 aa		13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	COL11A1	P12107	1806 aa	Predicted RBP	13.73	□□□□□ -0.21
COMMD9-208	ENST00000533643	NFIB	O00712	420 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	OPLAH	O14841	1288 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	ERCC3	P19447	782 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	CCNA1	P78396	465 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	PPP1R18	Q6NYC8	613 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	NCAPG2	Q86XI2	1143 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	SHCBP1	Q8NEM2	672 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	CHST13	Q8NET6	341 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	WBP1L	Q9NX94	342 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	KCNJ14	Q9UNX9	436 aa		13.72	□□□□□ -0.21
COMMD9-208	ENST00000533643	SMCO2	A6NFE2	343 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	COPB2	P35606	906 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	LARP1B	Q659C4	914 aa	Known RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	KRT40	Q6A162	431 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	FAM177A1	Q8N128	213 aa	Predicted RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	FBXO18	Q8NFZ0	1043 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	TBC1D5	Q92609	795 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	C8orf76	Q96K31	380 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	IPO9	Q96P70	1041 aa	Known RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	PHF20	Q9BVI0	1012 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	MROH8	Q9H579	483 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	ACAD9	Q9H845	621 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	PSTPIP2	Q9H939	334 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	EFCC1	Q9HA90	598 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	CWC22	Q9HCG8	908 aa	Known RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	RIC8A	Q9NPQ8	531 aa		13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	DAXX	Q9UER7	740 aa	Predicted RBP	13.71	□□□□□ -0.21
COMMD9-208	ENST00000533643	ESYT2	A0FGR8	921 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	ADAMTS3	O15072	1205 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	XBP1	P17861	261 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	NLRP5	P59047	1200 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	GUCY1B3	Q02153	619 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	NPY5R	Q15761	445 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	JMY	Q8N9B5	988 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	RGS22	Q8NE09	1264 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	CCDC148	Q8NFR7	591 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	BEGAIN	Q9BUH8	593 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	ZMYND12	Q9H0C1	365 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	FBXO40	Q9UH90	709 aa		13.7	□□□□□ -0.22
COMMD9-208	ENST00000533643	SMCHD1	A6NHR9	2005 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	PDC	P20941	246 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	SYT1	P21579	422 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	MAPK4	P31152	587 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	ADCY7	P51828	1080 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	MRPL12	P52815	198 aa	Known RBP	13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	GHRHR	Q02643	423 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	TRIM29	Q14134	588 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	NSMF	Q6X4W1	530 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	MCF2L2	Q86YR7	1114 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	CCAR1	Q8IX12	1150 aa	Known RBP	13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	CUL5	Q93034	780 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	C6orf50	Q9HD87	102 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	PCDHA4	Q9UN74	947 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	PCNT	O95613	3336 aa		13.69	□□□□□ -0.22
COMMD9-208	ENST00000533643	MYH6	P13533	1939 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	GCOM1	H8Y6P7	765 aa	Predicted RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	GPR25	O00155	361 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	MEIS2	O14770	477 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	CFB	P00751	764 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	MMP1	P03956	469 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	POLR2M	P0CAP2	368 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	CALML3	P27482	149 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	CTGF	P29279	349 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	GNA11	P29992	359 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	HOXA13	P31271	388 aa	Predicted RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	HSD17B4	P51659	736 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	LACTB	P83111	547 aa	Predicted RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	SP3	Q02447	781 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	BAAT	Q14032	418 aa	Predicted RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	UBE2S	Q16763	222 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	NOM1	Q5C9Z4	860 aa	Known RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	WDR78	Q5VTH9	848 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	GALNT17	Q6IS24	598 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	USP17L6P	Q6QN14	398 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	PLEKHH3	Q7Z736	793 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	DAGLB	Q8NCG7	672 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	OXER1	Q8TDS5	423 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	MAF1	Q9H063	256 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	GLT8D2	Q9H1C3	349 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	A1CF	Q9NQ94	594 aa	Known RBP	13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643	TSKS	Q9UJT2	592 aa		13.68	□□□□□ -0.22
COMMD9-208	ENST00000533643		H3BQV1	296 aa		13.67	□□□□□ -0.22
COMMD9-208	ENST00000533643		M0R2N6	131 aa		13.67	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms