RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 CCND3P30281 292 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-208ENST00000532560 SLC35G1Q2M3R5 365 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 QRICH1Q2TAL8 776 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 MAMDC4Q6UXC1 1216 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 FAM133AQ8N9E0 248 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 CTCFLQ8NI51 663 aaPredicted RBP17.5■□□□□ 0.39
CPSF1-208ENST00000532560 NUP133Q8WUM0 1156 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 FGD4Q96M96 766 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 MYL10Q9BUA6 226 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 RIOX1Q9H6W3 641 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 CYP39A1Q9NYL5 469 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 SLC12A7Q9Y666 1083 aa17.5■□□□□ 0.39
CPSF1-208ENST00000532560 POTEB2H3BUK9 544 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 NFIBO00712 420 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 EIF5BO60841 1220 aaKnown RBP17.49■□□□□ 0.39
CPSF1-208ENST00000532560 PSMA5P28066 241 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 MLLT1Q03111 559 aaPredicted RBP17.49■□□□□ 0.39
CPSF1-208ENST00000532560 NSMFQ6X4W1 530 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 TRPV1Q8NER1 839 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 CLEC4DQ8WXI8 215 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 TCEANC2Q96MN5 208 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 MAF1Q9H063 256 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 FRMPD3Q5JV73 1810 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 LCTP09848 1927 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 MYH6P13533 1939 aa17.49■□□□□ 0.39
CPSF1-208ENST00000532560 ABCB11O95342 1321 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 ZBTB5O15062 677 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 MSCO60682 206 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 GNAQP50148 359 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 CNTN2Q02246 1040 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 USH1GQ495M9 461 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 APOA5Q6Q788 366 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 BLOC1S2Q6QNY1 142 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 FBXO11Q86XK2 927 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 SPZ1Q9BXG8 430 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 VAT1LQ9HCJ6 419 aa17.48■□□□□ 0.39
CPSF1-208ENST00000532560 RBM19Q9Y4C8 960 aaKnown RBP17.48■□□□□ 0.39
CPSF1-208ENST00000532560 CYTH3O43739 400 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 SMARCA1P28370 1054 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 RCAN1P53805 252 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 FBXL16Q8N461 479 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 RGS22Q8NE09 1264 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 LZTS2Q9BRK4 669 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 AMNQ9BXJ7 453 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 DDX20Q9UHI6 824 aaKnown RBP17.47■□□□□ 0.39
CPSF1-208ENST00000532560 OGDHLQ9ULD0 1010 aa17.47■□□□□ 0.39
CPSF1-208ENST00000532560 PTPDC1A2A3K4 754 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 SEPT4O43236 478 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 SLC34A2O95436 690 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 SNAI1O95863 264 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-208ENST00000532560 TFRCP02786 760 aaKnown RBP17.46■□□□□ 0.39
CPSF1-208ENST00000532560 CPA1P15085 419 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 CASTP20810 708 aaKnown RBP17.46■□□□□ 0.39
CPSF1-208ENST00000532560 RPS6KB1P23443 525 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 BAATQ14032 418 aaPredicted RBP17.46■□□□□ 0.39
CPSF1-208ENST00000532560 LHX8Q68G74 356 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 SYNE3Q6ZMZ3 975 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 UBE2Q1Q7Z7E8 422 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 MICU3Q86XE3 530 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 ANKLE1Q8NAG6 615 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 PIGSQ96S52 555 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 CNPY2Q9Y2B0 182 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 MRPL11Q9Y3B7 192 aaKnown RBP17.46■□□□□ 0.39
CPSF1-208ENST00000532560 LRRC37A2A6NM11 1700 aa17.46■□□□□ 0.39
CPSF1-208ENST00000532560 ASTN1O14525 1302 aa17.46■□□□□ 0.38
CPSF1-208ENST00000532560 LOC102724159A0A0B4J2E5 919 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 PNMA6FA0A0J9YX94 578 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 SOWAHBA6NEL2 793 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 PPP1R11O60927 126 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-208ENST00000532560 FARP2O94887 1054 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-208ENST00000532560 RXRAP19793 462 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 FGD1P98174 961 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 TRAF1Q13077 416 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 PWP2Q15269 919 aaKnown RBP17.45■□□□□ 0.38
CPSF1-208ENST00000532560 SLC30A10Q6XR72 485 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 RNF207Q6ZRF8 634 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 ARMCX2Q7L311 632 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 HOMER1Q86YM7 354 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 CCDC144CPQ8IYA2 1237 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 FANCBQ8NB91 859 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 AGXT2Q9BYV1 514 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 TM6SF1Q9BZW5 370 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.45■□□□□ 0.38
CPSF1-208ENST00000532560 BRPF3Q9ULD4 1205 aa17.45■□□□□ 0.38
CPSF1-208ENST00000532560 MCM3APO60318 1980 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 ASB14A6NK59 587 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 ZBTB43O43298 467 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 PLEKHA8P1O95397 391 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 ZNF865P0CJ78 1059 aaPredicted RBP17.44■□□□□ 0.38
CPSF1-208ENST00000532560 CNGA1P29973 690 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 RPS6P62753 249 aaKnown RBP17.44■□□□□ 0.38
CPSF1-208ENST00000532560 PRAMEF19Q5SWL8 479 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 Q6ZUG5 572 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 TMTC3Q6ZXV5 915 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 MCF2L2Q86YR7 1114 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 RAB11FIP4Q86YS3 637 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 ZSWIM6Q9HCJ5 1215 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 RBM28Q9NW13 759 aaKnown RBP17.44■□□□□ 0.38
CPSF1-208ENST00000532560 PCDHA1Q9Y5I3 950 aa17.44■□□□□ 0.38
CPSF1-208ENST00000532560 BAZ2BQ9UIF8 2168 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms