RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 KSR1Q8IVT5 923 aa8.75□□□□□ -1.01
PCF11-202ENST00000528336 LRRC47Q8N1G4 583 aaKnown RBP8.75□□□□□ -1.01
PCF11-202ENST00000528336 SP110Q9HB58 689 aa8.75□□□□□ -1.01
PCF11-202ENST00000528336 CLEC1BQ9P126 229 aa8.75□□□□□ -1.01
PCF11-202ENST00000528336 GPR160Q9UJ42 338 aa8.75□□□□□ -1.01
PCF11-202ENST00000528336 PSPNO60542 156 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 TBC1D8O95759 1140 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 THBDP07204 575 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 HOXC12P31275 282 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 GALK1P51570 392 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 LAPTM5Q13571 262 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 NFE2L2Q16236 605 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 PRSS53Q2L4Q9 553 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 HLA-DQA1Q5Y7H0 255 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 CPNE8Q86YQ8 564 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 MRFAP1L1Q96HT8 127 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 KDM2BQ8NHM5 1336 aa8.74□□□□□ -1.01
PCF11-202ENST00000528336 NPHP3-ACAD11A0A0J9YXS1 232 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 LOC100996750A0A140TA64 210 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 NOTOA8MTQ0 251 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 PRODHO43272 600 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 PAPLNO95428 1278 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 PLS3P13797 630 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 ITGB5P18084 799 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 CEBPAP49715 358 aaPredicted RBP8.73□□□□□ -1.01
PCF11-202ENST00000528336 CYP4F3Q08477 520 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 CYP2R1Q6VVX0 501 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 SIRT2Q8IXJ6 389 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 COPS5Q92905 334 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 ZNF669Q96BR6 464 aaPredicted RBP8.73□□□□□ -1.01
PCF11-202ENST00000528336 JMJD8Q96S16 334 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 AARSD1Q9BTE6 412 aaKnown RBP8.73□□□□□ -1.01
PCF11-202ENST00000528336 IER2Q9BTL4 223 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 KRTAP4-6Q9BYQ5 205 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 PIF1Q9H611 641 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 ARHGEF4Q9NR80 690 aa8.73□□□□□ -1.01
PCF11-202ENST00000528336 PAMP19021 973 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 KIR3DS1Q14943 382 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 NR0B2Q15466 257 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 KCNMB1Q16558 191 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 HSF5Q4G112 596 aaPredicted RBP8.72□□□□□ -1.01
PCF11-202ENST00000528336 TMEM67Q5HYA8 995 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 YOD1Q5VVQ6 348 aaPredicted RBP8.72□□□□□ -1.01
PCF11-202ENST00000528336 SLCO6A1Q86UG4 719 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 ZSWIM9Q86XI8 627 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 CCDC140Q96MF4 163 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 TAF6LQ9Y6J9 622 aa8.72□□□□□ -1.01
PCF11-202ENST00000528336 TRAV20A0A0B4J274 112 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQ45 241 aaPredicted RBP8.71□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQY0 241 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 WTIPA6NIX2 430 aaPredicted RBP8.71□□□□□ -1.02
PCF11-202ENST00000528336 NRDCO43847 1150 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 CAPNS1P04632 268 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 FAM153BP0C7A2 387 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 JUNBP17275 347 aaPredicted RBP8.71□□□□□ -1.02
PCF11-202ENST00000528336 GFRA1P56159 465 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 GALNT18Q6P9A2 607 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 LILRA2Q8N149 483 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 TMEM145Q8NBT3 493 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 FRS2Q8WU20 508 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 PLCD4Q9BRC7 762 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 RNF32Q9H0A6 362 aa8.71□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQ27 194 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQ64 194 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQC6 194 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 A0A1W2PQD8 194 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 ADCY3O60266 1144 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 EFEMP2O95967 443 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 CPP00450 1065 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 NSMFQ6X4W1 530 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 NPLOC4Q8TAT6 608 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 FAM168AQ92567 244 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 CDC6Q99741 560 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 IMPACTQ9P2X3 320 aa8.7□□□□□ -1.02
PCF11-202ENST00000528336 DLX3O60479 287 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 IGSF3O75054 1194 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 SCG5P05408 212 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 PABPC1P11940 636 aaKnown RBP8.69□□□□□ -1.02
PCF11-202ENST00000528336 PRKCAP17252 672 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 L1CAMP32004 1257 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 LILRB2Q8N423 598 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 ZBTB38Q8NAP3 1195 aaPredicted RBP8.69□□□□□ -1.02
PCF11-202ENST00000528336 KREMEN2Q8NCW0 462 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 NUP43Q8NFH3 380 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 KCTD13Q8WZ19 329 aa8.69□□□□□ -1.02
PCF11-202ENST00000528336 TRBV23OR9-2A0A075B6M9 112 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 GLI1P08151 1106 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 SNX17Q15036 470 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 FOXB2Q5VYV0 432 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 MCTP1Q6DN14 999 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 DENND5AQ6IQ26 1287 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 NLRX1Q86UT6 975 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 PPIL6Q8IXY8 311 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 OSBP2Q969R2 916 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 SHISA4Q96DD7 197 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 IPO9Q96P70 1041 aaKnown RBP8.68□□□□□ -1.02
PCF11-202ENST00000528336 TMEFF2Q9UIK5 374 aaPredicted RBP8.68□□□□□ -1.02
PCF11-202ENST00000528336 CARMIL2Q6F5E8 1435 aa8.68□□□□□ -1.02
PCF11-202ENST00000528336 MEFVO15553 781 aaPredicted RBP8.67□□□□□ -1.02
PCF11-202ENST00000528336 FGFR1P11362 822 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms