RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 SMARCE1Q969G3 411 aa23.49■■□□□ 1.35
VPS28-209ENST00000528142 TMEM232C9JQI7 657 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 NEMFO60524 1076 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 OR52Z1P0C646 297 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 TNNI2P48788 182 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 MORC3Q14149 939 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 RASA3Q14644 834 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 TRIML1Q8N9V2 468 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 PSTPIP2Q9H939 334 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 RTN4Q9NQC3 1192 aaKnown RBP23.48■■□□□ 1.35
VPS28-209ENST00000528142 PCDHA1Q9Y5I3 950 aa23.48■■□□□ 1.35
VPS28-209ENST00000528142 IKBKBO14920 756 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 UBE2SQ16763 222 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 KIAA1755Q5JYT7 1200 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 SYDE2Q5VT97 1194 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 PDXDC2PQ6P474 469 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 MICALL2Q8IY33 904 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 TEPSINQ96N21 525 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 ZKSCAN5Q9Y2L8 839 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 SMTNL1A8MU46 457 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.47■■□□□ 1.35
VPS28-209ENST00000528142 CCSER1Q9C0I3 900 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 GLT8D2Q9H1C3 349 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 GJA3Q9Y6H8 435 aa23.47■■□□□ 1.35
VPS28-209ENST00000528142 CDC25AP30304 524 aa23.46■■□□□ 1.35
VPS28-209ENST00000528142 AFMP43652 599 aa23.46■■□□□ 1.35
VPS28-209ENST00000528142 DPYDQ12882 1025 aa23.46■■□□□ 1.35
VPS28-209ENST00000528142 CNOT7Q9UIV1 285 aaKnown RBP23.46■■□□□ 1.35
VPS28-209ENST00000528142 SMC2O95347 1197 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 TXLNAP40222 546 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 TNFAIP1Q13829 316 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 SAMD7Q7Z3H4 446 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 SPICE1Q8N0Z3 855 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 MTMR9Q96QG7 549 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 AMNQ9BXJ7 453 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 SCAF8Q9UPN6 1271 aaKnown RBP23.45■■□□□ 1.34
VPS28-209ENST00000528142 PHF20L1A8MW92 1017 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 SOCS7O14512 581 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 CDC25BP30305 580 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 MLKLQ8NB16 471 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 AK8Q96MA6 479 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 MTRQ99707 1265 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 GOPCQ9HD26 462 aa23.45■■□□□ 1.34
VPS28-209ENST00000528142 FRMD4AQ9P2Q2 1039 aaPredicted RBP23.45■■□□□ 1.34
VPS28-209ENST00000528142 PP2D1A8MPX8 630 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 SNAP25P60880 206 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 KARSQ15046 597 aaKnown RBP23.44■■□□□ 1.34
VPS28-209ENST00000528142 POTEDQ86YR6 584 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 MRFAP1L1Q96HT8 127 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 HSD3B7Q9H2F3 369 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 DISC1Q9NRI5 854 aa23.44■■□□□ 1.34
VPS28-209ENST00000528142 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.44■■□□□ 1.34
VPS28-209ENST00000528142 CLCN1P35523 988 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 PPP4R3AQ6IN85 833 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 SPC24Q8NBT2 197 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 GSDMAQ96QA5 445 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 VCPKMTQ9H867 229 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 PRR12Q9ULL5 1215 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 ASTN2O75129 1339 aaPredicted RBP23.43■■□□□ 1.34
VPS28-209ENST00000528142 TDP2O95551 362 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 CASP1P29466 404 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 IKQ13123 557 aaPredicted RBP23.43■■□□□ 1.34
VPS28-209ENST00000528142 NAALADL2Q58DX5 795 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 FBXO11Q86XK2 927 aa23.43■■□□□ 1.34
VPS28-209ENST00000528142 USP17L15C9J2P7 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L13C9JLJ4 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L11C9JVI0 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L18D6R9N7 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L22D6RA61 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L17D6RBQ6 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L19D6RCP7 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L20D6RJB6 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 SLC37A4O43826 429 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 ASNSP08243 561 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 MSNP26038 577 aaKnown RBP23.42■■□□□ 1.34
VPS28-209ENST00000528142 UBA7P41226 1012 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 MYL5Q02045 173 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L24Q0WX57 530 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 TBC1D10BQ4KMP7 808 aaPredicted RBP23.42■■□□□ 1.34
VPS28-209ENST00000528142 USP17L6PQ6QN14 398 aa23.42■■□□□ 1.34
VPS28-209ENST00000528142 MEIS2O14770 477 aa23.41■■□□□ 1.34
VPS28-209ENST00000528142 STAT2P52630 851 aa23.41■■□□□ 1.34
VPS28-209ENST00000528142 FAM83BQ5T0W9 1011 aa23.41■■□□□ 1.34
VPS28-209ENST00000528142 IGSF22Q8N9C0 903 aa23.41■■□□□ 1.34
VPS28-209ENST00000528142 RNF181Q9P0P0 153 aa23.41■■□□□ 1.34
VPS28-209ENST00000528142 GOLGA6L6A8MZA4 724 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 GTPBP6O43824 516 aaPredicted RBP23.4■■□□□ 1.34
VPS28-209ENST00000528142 STAT6P42226 847 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 TPM4P67936 248 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 CALCRLQ16602 461 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 KIF4BQ2VIQ3 1234 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 STAMQ92783 540 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 GLIS2Q9BZE0 524 aaPredicted RBP23.4■■□□□ 1.34
VPS28-209ENST00000528142 SH2D4AQ9H788 454 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 DACH1Q9UI36 760 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 HACL1Q9UJ83 578 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 PLA2G6O60733 806 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 TPM3P06753 285 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 TECP42680 631 aa23.4■■□□□ 1.34
VPS28-209ENST00000528142 RRAGBQ5VZM2 374 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms