RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 SGSM1Q2NKQ1 1148 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 CMPK2Q5EBM0 449 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 AKNAD1Q5T1N1 836 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 MSL1Q68DK7 614 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 GET4Q7L5D6 327 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 KIRREL3Q8IZU9 778 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 PHC3Q8NDX5 983 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 ERMNQ8TAM6 284 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 CCDC12Q8WUD4 166 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 TEKT4Q8WW24 435 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 MAIP1Q8WWC4 291 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 ZNF837Q96EG3 531 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 GMCL1Q96IK5 515 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 SPATA32Q96LK8 384 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 TRAPPC9Q96Q05 1148 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 IWS1Q96ST2 819 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 UPF3BQ9BZI7 483 aaKnown RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 EPN3Q9H201 632 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 NOD2Q9HC29 1040 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 RAB6BQ9NRW1 208 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 TUBA8Q9NY65 449 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 WDR35Q9P2L0 1181 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 BIN2Q9UBW5 565 aaPredicted RBP6.48□□□□□ -1.37
CD44-225ENST00000527326 SAMM50Q9Y512 469 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 FRMPD1Q5SYB0 1578 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 TTC37Q6PGP7 1564 aa6.48□□□□□ -1.37
CD44-225ENST00000527326 ZFYVE16Q7Z3T8 1539 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 GPR75-ASB3A0A0A6YYF3 556 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 CFAP73A6NFT4 308 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 M0R2C6 588 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 PRC1O43663 620 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 PFKFB2O60825 505 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 TMCC1O94876 653 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 MYCP01106 439 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 CCDC175P0C221 793 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 CCDC166P0CW27 439 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 IBSPP21815 317 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 GNAQP50148 359 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 MRPS35P82673 323 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 MXRA7P84157 204 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 MAP3K10Q02779 954 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 EXOSC9Q06265 439 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 SEPT2Q15019 361 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 PKN1Q16512 942 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 SKIDA1Q1XH10 827 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 INF2Q27J81 1249 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 SH2D4BQ5SQS7 431 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 EMC10Q5UCC4 262 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 NAA35Q5VZE5 725 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 LYPD4Q6UWN0 246 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 C6orf89Q6UWU4 347 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 SYNE3Q6ZMZ3 975 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 APBB1IPQ7Z5R6 666 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 ELOA2Q8IYF1 753 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 NME8Q8N427 588 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 ATP11CQ8NB49 1132 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 WDR66Q8TBY9 1149 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 ZNF473Q8WTR7 871 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 GTPBP3Q969Y2 492 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 SYTL4Q96C24 671 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 OPTNQ96CV9 577 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 RPGRIP1Q96KN7 1286 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 TTC14Q96N46 770 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 WDR24Q96S15 920 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 NUP58Q9BVL2 599 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 CDCA7Q9BWT1 371 aaPredicted RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 XPO4Q9C0E2 1151 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 NACA2Q9H009 215 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 TIMMDC1Q9NPL8 285 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 ZNHIT6Q9NWK9 470 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 PAIP2BQ9ULR5 123 aaKnown RBP6.47□□□□□ -1.37
CD44-225ENST00000527326 DAAM1Q9Y4D1 1078 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 ASB3Q9Y575 518 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 TRAPPC8Q9Y2L5 1435 aa6.47□□□□□ -1.37
CD44-225ENST00000527326 GOLGA6L10A0A0M3HER8 536 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 TMEM88BA6NKF7 163 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CYP27B1O15528 508 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 STX10O60499 249 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 KRT38O76015 456 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CEP152O94986 1710 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 ZNF202O95125 648 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 KIF4AO95239 1232 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 GNRH1P01148 92 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 GSTA1P08263 222 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 PARP1P09874 1014 aaKnown RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 FAM200BP0CF97 657 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 GJB2P29033 226 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 IRS1P35568 1242 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 SCNN1BP51168 640 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CCNG1P51959 295 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 CLPPQ16740 277 aaPredicted RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 GNPTABQ3T906 1256 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 USH1GQ495M9 461 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 PABPC1LQ4VXU2 614 aaKnown RBP6.46□□□□□ -1.38
CD44-225ENST00000527326 ANKRD20A8PQ5CZ79 823 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 SPECC1Q5M775 1068 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 ALS2CLQ60I27 953 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 C16orf87Q6PH81 154 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 KDM7AQ6ZMT4 941 aa6.46□□□□□ -1.38
CD44-225ENST00000527326 NOL8Q76FK4 1167 aaKnown RBP6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms