RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 SPDYE5A6NIY4 337 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 ZNF202O95125 648 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 PFKFB1P16118 471 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 HMGCS2P54868 508 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 SDF4Q9BRK5 362 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 USP25Q9UHP3 1055 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 PCDHB6Q9Y5E3 794 aa21.54■■□□□ 1.04
VPS28-207ENST00000526977 CUTAO60888 179 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 EARS2Q5JPH6 523 aaKnown RBP21.53■■□□□ 1.04
VPS28-207ENST00000526977 BLIDQ8IZY5 108 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 DAGLBQ8NCG7 672 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 KIFC2Q96AC6 838 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 CLMNQ96JQ2 1002 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 CLIC6Q96NY7 704 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 AMNQ9BXJ7 453 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 PAPPA2Q9BXP8 1791 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 SMCO2A6NFE2 343 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 CXCL11O14625 94 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 COA7Q96BR5 231 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 SLF1Q9BQI6 1058 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 HPSEQ9Y251 543 aa21.53■■□□□ 1.04
VPS28-207ENST00000526977 FAM237AA0A1B0GTK4 181 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 FAM205CA6NFA0 338 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 PPP1R11O60927 126 aaPredicted RBP21.52■■□□□ 1.04
VPS28-207ENST00000526977 RESP18Q5W5W9 173 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 FBXO11Q86XK2 927 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 C2orf69Q8N8R5 385 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 TNFRSF25Q93038 417 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 TANGO6Q9C0B7 1094 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 RANBP17Q9H2T7 1088 aaKnown RBP21.52■■□□□ 1.04
VPS28-207ENST00000526977 RPAP3Q9H6T3 665 aaPredicted RBP21.52■■□□□ 1.04
VPS28-207ENST00000526977 CBX8Q9HC52 389 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 GBA2Q9HCG7 927 aaPredicted RBP21.52■■□□□ 1.04
VPS28-207ENST00000526977 PCDHA1Q9Y5I3 950 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 PHIPQ8WWQ0 1821 aa21.52■■□□□ 1.04
VPS28-207ENST00000526977 FMR1Q06787 632 aaKnown RBP eCLIP21.51■■□□□ 1.03
VPS28-207ENST00000526977 KRI1Q8N9T8 703 aaKnown RBP21.51■■□□□ 1.03
VPS28-207ENST00000526977 SLC10A4Q96EP9 437 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 OTUD5Q96G74 571 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 GLT8D2Q9H1C3 349 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 CELF2O95319 508 aaKnown RBP21.51■■□□□ 1.03
VPS28-207ENST00000526977 ITGBL1O95965 494 aaPredicted RBP21.51■■□□□ 1.03
VPS28-207ENST00000526977 FDX1P10109 184 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 ATP2B1P20020 1258 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 PPIL2Q13356 520 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 DGKZQ13574 1117 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 HS1BP3Q53T59 392 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 DNAJC25Q9H1X3 360 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 GPBP1L1Q9HC44 474 aaPredicted RBP21.51■■□□□ 1.03
VPS28-207ENST00000526977 FBXO28Q9NVF7 368 aa21.51■■□□□ 1.03
VPS28-207ENST00000526977 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.51■■□□□ 1.03
VPS28-207ENST00000526977 OTOFQ9HC10 1997 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 IRF6O14896 467 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 AP5Z1O43299 807 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 FLOT1O75955 427 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 ADCY5O95622 1261 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 PTPREP23469 700 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 LUZP1Q86V48 1076 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 CNKSR2Q8WXI2 1034 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 ERCC4Q92889 916 aaPredicted RBP21.5■■□□□ 1.03
VPS28-207ENST00000526977 FBXO2Q9UK22 296 aaPredicted RBP21.5■■□□□ 1.03
VPS28-207ENST00000526977 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP21.5■■□□□ 1.03
VPS28-207ENST00000526977 ESPNB1AK53 854 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 CAVIN2O95810 425 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 SYKP43405 635 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 ZNF165P49910 485 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 OPTNQ96CV9 577 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 TIGD1Q96MW7 591 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 PPP1R9AQ9ULJ8 1098 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 KCNH4Q9UQ05 1017 aa21.5■■□□□ 1.03
VPS28-207ENST00000526977 M0R2N6 131 aa21.49■■□□□ 1.03
VPS28-207ENST00000526977 MRPL12P52815 198 aaKnown RBP21.49■■□□□ 1.03
VPS28-207ENST00000526977 NOM1Q5C9Z4 860 aaKnown RBP21.49■■□□□ 1.03
VPS28-207ENST00000526977 KIAA1468Q9P260 1216 aa21.49■■□□□ 1.03
VPS28-207ENST00000526977 CEP131Q9UPN4 1083 aa21.49■■□□□ 1.03
VPS28-207ENST00000526977 A0A0G2JLL6 359 aaPredicted RBP21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L15C9J2P7 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L13C9JLJ4 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L11C9JVI0 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L18D6R9N7 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L22D6RA61 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L17D6RBQ6 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L19D6RCP7 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L20D6RJB6 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 ADCY7P51828 1080 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 SNAP25P60880 206 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 USP17L24Q0WX57 530 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 STX1AQ16623 288 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 CATSPERGQ6ZRH7 1159 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 PRRT2Q7Z6L0 340 aaPredicted RBP21.48■■□□□ 1.03
VPS28-207ENST00000526977 PROCA1Q8NCQ7 364 aaPredicted RBP21.48■■□□□ 1.03
VPS28-207ENST00000526977 RIC8AQ9NPQ8 531 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 PNMA2Q9UL42 364 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 ADAMTS3O15072 1205 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 GRIN1Q05586 938 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 COG2Q14746 738 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 TEX2Q8IWB9 1127 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 CUL5Q93034 780 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 PSTPIP2Q9H939 334 aa21.48■■□□□ 1.03
VPS28-207ENST00000526977 PCDHA6Q9UN73 950 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms