RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 TRERF1Q96PN7 1200 aa24.03■■□□□ 1.44
CD44-222ENST00000526025 NUDT12Q9BQG2 462 aa24.03■■□□□ 1.44
CD44-222ENST00000526025 HOXC6P09630 235 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 CCT2P78371 535 aaKnown RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 KCTD2Q14681 263 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 ME3Q16798 604 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 WDR78Q5VTH9 848 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 CPLX2Q6PUV4 134 aaKnown RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 HOMER1Q86YM7 354 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 CMTR1Q8N1G2 835 aaKnown RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 RGS22Q8NE09 1264 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 MMP19Q99542 508 aa24.02■■□□□ 1.44
CD44-222ENST00000526025 LARP6Q9BRS8 491 aaKnown RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 RNF26Q9BY78 433 aaPredicted RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 SH2B1Q9NRF2 756 aaPredicted RBP24.02■■□□□ 1.44
CD44-222ENST00000526025 hCG_1984214I3L0E3 225 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 PPP1R11O60927 126 aaPredicted RBP24.01■■□□□ 1.43
CD44-222ENST00000526025 XRCC5P13010 732 aaKnown RBP24.01■■□□□ 1.43
CD44-222ENST00000526025 PRKCZQ05513 592 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 SCRN1Q12765 414 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 MAP2K5Q13163 448 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 SAMD3Q8N6K7 520 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 ZNF713Q8N859 430 aaPredicted RBP24.01■■□□□ 1.43
CD44-222ENST00000526025 GTF3C6Q969F1 213 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 PTPN22Q9Y2R2 807 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 MRPL11Q9Y3B7 192 aaKnown RBP24.01■■□□□ 1.43
CD44-222ENST00000526025 PFASO15067 1338 aa24.01■■□□□ 1.43
CD44-222ENST00000526025 CPLX1O14810 134 aa24■■□□□ 1.43
CD44-222ENST00000526025 PRPF3O43395 683 aaKnown RBP24■■□□□ 1.43
CD44-222ENST00000526025 CDKL5O76039 1030 aa24■■□□□ 1.43
CD44-222ENST00000526025 RGS2P41220 211 aa24■■□□□ 1.43
CD44-222ENST00000526025 FLT3LGP49771 235 aa24■■□□□ 1.43
CD44-222ENST00000526025 TEX2Q8IWB9 1127 aa24■■□□□ 1.43
CD44-222ENST00000526025 CLEC4DQ8WXI8 215 aa24■■□□□ 1.43
CD44-222ENST00000526025 NCOA5Q9HCD5 579 aaKnown RBP24■■□□□ 1.43
CD44-222ENST00000526025 HOMER2Q9NSB8 354 aa24■■□□□ 1.43
CD44-222ENST00000526025 SLC5A4Q9NY91 659 aa24■■□□□ 1.43
CD44-222ENST00000526025 LCTP09848 1927 aa24■■□□□ 1.43
CD44-222ENST00000526025 ADORA2AP29274 412 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 GHRHRQ02643 423 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 STK3Q13188 491 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 USH1GQ495M9 461 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 MUM1L1Q5H9M0 696 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 FBXO46Q6PJ61 603 aaPredicted RBP23.99■■□□□ 1.43
CD44-222ENST00000526025 TRMT44Q8IYL2 757 aaKnown RBP23.99■■□□□ 1.43
CD44-222ENST00000526025 CCDC82Q8N4S0 544 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 APBA2Q99767 749 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 GABRQQ9UN88 632 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 DIS3Q9Y2L1 958 aaKnown RBP23.99■■□□□ 1.43
CD44-222ENST00000526025 PCDHA1Q9Y5I3 950 aa23.99■■□□□ 1.43
CD44-222ENST00000526025 DNAJC25-GNG10A0A024R161 153 aa23.98■■□□□ 1.43
CD44-222ENST00000526025 SLC4A3P48751 1232 aa23.98■■□□□ 1.43
CD44-222ENST00000526025 MCF2L2Q86YR7 1114 aa23.98■■□□□ 1.43
CD44-222ENST00000526025 TRIM22Q8IYM9 498 aa23.98■■□□□ 1.43
CD44-222ENST00000526025 PXYLP1Q8TE99 480 aa23.98■■□□□ 1.43
CD44-222ENST00000526025 A1CFQ9NQ94 594 aaKnown RBP23.98■■□□□ 1.43
CD44-222ENST00000526025 MAP3K20Q9NYL2 800 aaKnown RBP23.98■■□□□ 1.43
CD44-222ENST00000526025 V9GY48 417 aaPredicted RBP23.98■■□□□ 1.43
CD44-222ENST00000526025 ECM2O94769 699 aaPredicted RBP23.97■■□□□ 1.43
CD44-222ENST00000526025 LARGE1O95461 756 aa23.97■■□□□ 1.43
CD44-222ENST00000526025 PFKFB3Q16875 520 aaPredicted RBP23.97■■□□□ 1.43
CD44-222ENST00000526025 PPP1R18Q6NYC8 613 aa23.97■■□□□ 1.43
CD44-222ENST00000526025 NOL8Q76FK4 1167 aaKnown RBP23.97■■□□□ 1.43
CD44-222ENST00000526025 ANKRD35Q8N283 1001 aa23.97■■□□□ 1.43
CD44-222ENST00000526025 STK36Q9NRP7 1315 aa23.97■■□□□ 1.43
CD44-222ENST00000526025 NFIBO00712 420 aa23.96■■□□□ 1.43
CD44-222ENST00000526025 AKAP17AQ02040 695 aaKnown RBP23.96■■□□□ 1.43
CD44-222ENST00000526025 FAM177A1Q8N128 213 aaPredicted RBP23.96■■□□□ 1.43
CD44-222ENST00000526025 SLAIN1Q8ND83 568 aa23.96■■□□□ 1.43
CD44-222ENST00000526025 RAET1EQ8TD07 263 aa23.96■■□□□ 1.43
CD44-222ENST00000526025 DDX11Q96FC9 970 aa23.96■■□□□ 1.43
CD44-222ENST00000526025 CYP39A1Q9NYL5 469 aa23.96■■□□□ 1.43
CD44-222ENST00000526025 COBLO75128 1261 aa23.95■■□□□ 1.42
CD44-222ENST00000526025 SCG2P13521 617 aa23.95■■□□□ 1.42
CD44-222ENST00000526025 TAL1P17542 331 aaPredicted RBP23.95■■□□□ 1.42
CD44-222ENST00000526025 SSRP1Q08945 709 aaKnown RBP23.95■■□□□ 1.42
CD44-222ENST00000526025 ZNF467Q7Z7K2 595 aaPredicted RBP23.95■■□□□ 1.42
CD44-222ENST00000526025 DPP9Q86TI2 863 aa23.95■■□□□ 1.42
CD44-222ENST00000526025 PIBF1Q8WXW3 757 aa23.95■■□□□ 1.42
CD44-222ENST00000526025 PTCH2Q9Y6C5 1203 aa23.95■■□□□ 1.42
CD44-222ENST00000526025 LOC102724159A0A0B4J2E5 919 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 OPLAHO14841 1288 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 DEXIO95424 95 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 PWP2Q15269 919 aaKnown RBP23.94■■□□□ 1.42
CD44-222ENST00000526025 ZNF792Q3KQV3 632 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 OLFML2BQ68BL8 750 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 RNF207Q6ZRF8 634 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 MSL3Q8N5Y2 521 aaKnown RBP23.94■■□□□ 1.42
CD44-222ENST00000526025 FAM133AQ8N9E0 248 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 PHKBQ93100 1093 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 SLC26A6Q9BXS9 759 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 BARHL2Q9NY43 387 aa23.94■■□□□ 1.42
CD44-222ENST00000526025 ADCY3O60266 1144 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 IGHA2P01877 340 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 CYP2B6P20813 491 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 HSD17B4P51659 736 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 PKN1Q16512 942 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 WWC2Q6AWC2 1192 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 NSMFQ6X4W1 530 aa23.93■■□□□ 1.42
CD44-222ENST00000526025 HEATR3Q7Z4Q2 680 aa23.93■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms