RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	CCDC155	Q8N6L0	562 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	SPATA4	Q8NEY3	305 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	CAVIN3	Q969G5	261 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	ERGIC2	Q96RQ1	377 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	CUEDC2	Q9H467	287 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	STIM2	Q9P246	746 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	HYOU1	Q9Y4L1	999 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	ZEB2	O60315	1214 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	LIG3	P49916	1009 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	PFKFB3	Q16875	520 aa	Predicted RBP	11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	SKIDA1	Q1XH10	827 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	GLE1	Q53GS7	698 aa	Known RBP	11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	FKBP15	Q5T1M5	1219 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	CCDC181	Q5TID7	509 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	CERS3	Q8IU89	383 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	SDR42E1	Q8WUS8	393 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	PCMTD1	Q96MG8	357 aa	Predicted RBP	11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	BRIP1	Q9BX63	1249 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	IFIH1	Q9BYX4	1025 aa	Known RBP	11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	SH2D4A	Q9H788	454 aa		11.44	□□□□□ -0.58
SPIDR-225	ENST00000524141	TOGARAM1	Q9Y4F4	1720 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	FGR	P09769	529 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	HNRNPH3	P31942	346 aa	Known RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	PAFAH1B1	P43034	410 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	DTHD1	Q6ZMT9	781 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	DDX17	Q92841	729 aa	Known RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	KBTBD4	Q9NVX7	518 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	ERVV-1	B6SEH8	477 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	KLRC4	O43908	158 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	KIAA0754	O94854	1291 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	CCNE1	P24864	410 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	UBA7	P41226	1012 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	MTIF2	P46199	727 aa	Known RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	CYP27A1	Q02318	531 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	TMED8	Q6PL24	325 aa	Predicted RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	SRBD1	Q8N5C6	995 aa	Known RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	C4orf32	Q8N8J7	132 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	P2RX5	Q93086	422 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	CNOT6L	Q96LI5	555 aa	Known RBP	11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	OSBPL9	Q96SU4	736 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	LRRC1	Q9BTT6	524 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	CCSER1	Q9C0I3	900 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	LRWD1	Q9UFC0	647 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	PLAGL2	Q9UPG8	496 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	DUSP10	Q9Y6W6	482 aa		11.43	□□□□□ -0.58
SPIDR-225	ENST00000524141	LAD1	O00515	517 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	NAALADL2	Q58DX5	795 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	NOC4L	Q9BVI4	516 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	CARD10	Q9BWT7	1032 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	PRDM11	Q9NQV5	511 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	SH3GLB2	Q9NR46	395 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	DMGDH	Q9UI17	866 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	TSKS	Q9UJT2	592 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	MYH10	P35580	1976 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	COL5A2	P05997	1499 aa	Predicted RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	NDUFAB1	O14561	156 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	LCA5L	O95447	670 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	KIF5B	P33176	963 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	BCAM	P50895	628 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	SET	Q01105	290 aa	Predicted RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	MICALCL	Q6ZW33	695 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	BLID	Q8IZY5	108 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	RRP36	Q96EU6	259 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	DUSP9	Q99956	384 aa	Known RBP	11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	RNF14	Q9UBS8	474 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	PCDHA13	Q9Y5I0	950 aa		11.42	□□□□□ -0.58
SPIDR-225	ENST00000524141	RASSF10	A6NK89	507 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	C8orf74	Q6P047	294 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	CNPY4	Q8N129	248 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	CAPN6	Q9Y6Q1	641 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	MYH1	P12882	1939 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	BAZ2B	Q9UIF8	2168 aa	Known RBP	11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	HAUS3	Q68CZ6	603 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	IFT20	Q8IY31	132 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	KAT2B	Q92831	832 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	ASAP1	Q9ULH1	1129 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	PCDHA4	Q9UN74	947 aa		11.41	□□□□□ -0.58
SPIDR-225	ENST00000524141	CCDC194	A0A1B0GVG4	234 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	ZNF263	O14978	683 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	ORC4	O43929	436 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	HNRNPH1	P31943	449 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	PRPH	P41219	470 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	MNAT1	P51948	309 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	KIF11	P52732	1056 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	EZH2	Q15910	746 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	TTMP	Q5BVD1	217 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	MIIP	Q5JXC2	388 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	ADGRA1	Q86SQ6	560 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	CCDC84	Q86UT8	332 aa	Predicted RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	PRPF38A	Q8NAV1	312 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	HDAC7	Q8WUI4	952 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	AK8	Q96MA6	479 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	RIOK1	Q9BRS2	568 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	PAGR1	Q9BTK6	254 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	NHSL1	Q5SYE7	1610 aa		11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	TNKS1BP1	Q9C0C2	1729 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	IGHMBP2	P38935	993 aa	Known RBP	11.4	□□□□□ -0.58
SPIDR-225	ENST00000524141	COBLL1	Q53SF7	1204 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms