RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 C2orf71A6NGG8 1288 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 IGF2BP3O00425 579 aaKnown RBP eCLIP10.09□□□□□ -0.79
LSM1-202ENST00000520286 NOP2P46087 812 aaKnown RBP10.09□□□□□ -0.79
LSM1-202ENST00000520286 GUCY2FP51841 1108 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 DHCR24Q15392 516 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 CFAP100Q494V2 611 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 CCDC181Q5TID7 509 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 ZAR1Q86SH2 424 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 ALYREFQ86V81 257 aaKnown RBP10.09□□□□□ -0.79
LSM1-202ENST00000520286 MFSD4AQ8N468 514 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 ZNF655Q8N720 491 aaPredicted RBP10.09□□□□□ -0.79
LSM1-202ENST00000520286 FRS2Q8WU20 508 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 PCDHA9Q9Y5H5 950 aa10.09□□□□□ -0.79
LSM1-202ENST00000520286 WASHC2CQ9Y4E1 1318 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 GNAT3A8MTJ3 354 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 B4E1Z4 1266 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 ADMP35318 185 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 SEPT7Q16181 437 aaKnown RBP10.08□□□□□ -0.8
LSM1-202ENST00000520286 ACBD5Q5T8D3 534 aaPredicted RBP10.08□□□□□ -0.8
LSM1-202ENST00000520286 NPLOC4Q8TAT6 608 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 FCRL3Q96P31 734 aaPredicted RBP10.08□□□□□ -0.8
LSM1-202ENST00000520286 GPR62Q9BZJ7 368 aa10.08□□□□□ -0.8
LSM1-202ENST00000520286 MEFVO15553 781 aaPredicted RBP10.07□□□□□ -0.8
LSM1-202ENST00000520286 IFNGR1P15260 489 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 NAT1P18440 290 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 GUCY1A3Q02108 690 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 CYP27C1Q4G0S4 372 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 HSP90AB2PQ58FF8 381 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 CDCA2Q69YH5 1023 aaPredicted RBP10.07□□□□□ -0.8
LSM1-202ENST00000520286 RSPO2Q6UXX9 243 aaPredicted RBP10.07□□□□□ -0.8
LSM1-202ENST00000520286 MTDHQ86UE4 582 aaKnown RBP10.07□□□□□ -0.8
LSM1-202ENST00000520286 WDR66Q8TBY9 1149 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 TCTN2Q96GX1 697 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 ZFYVE21Q9BQ24 234 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 PHF20Q9BVI0 1012 aa10.07□□□□□ -0.8
LSM1-202ENST00000520286 THRAP3Q9Y2W1 955 aaKnown RBP10.07□□□□□ -0.8
LSM1-202ENST00000520286 HMX2A2RU54 273 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 BMP8BP34820 402 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 SEPHS1P49903 392 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 PIK3R6Q5UE93 754 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 ZCCHC8Q6NZY4 707 aaKnown RBP10.06□□□□□ -0.8
LSM1-202ENST00000520286 FMNL3Q8IVF7 1028 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 IFNL3Q8IZI9 196 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 SSBP4Q9BWG4 385 aaPredicted RBP10.06□□□□□ -0.8
LSM1-202ENST00000520286 PCDHA8Q9Y5H6 950 aa10.06□□□□□ -0.8
LSM1-202ENST00000520286 FAM155AB1AL88 458 aaPredicted RBP10.05□□□□□ -0.8
LSM1-202ENST00000520286 SRFP11831 508 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 VAV1P15498 845 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 GPR85P60893 370 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 RNF219Q5W0B1 726 aaPredicted RBP10.05□□□□□ -0.8
LSM1-202ENST00000520286 WNK4Q96J92 1243 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 SLC12A9Q9BXP2 914 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 DUSP15Q9H1R2 295 aaPredicted RBP10.05□□□□□ -0.8
LSM1-202ENST00000520286 C7orf69Q9H7B7 122 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 GPATCH2Q9NW75 528 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 TMEFF2Q9UIK5 374 aaPredicted RBP10.05□□□□□ -0.8
LSM1-202ENST00000520286 NPFFR2Q9Y5X5 522 aa10.05□□□□□ -0.8
LSM1-202ENST00000520286 PHLDB1Q86UU1 1377 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 BRINP1O60477 761 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 ALDH1L1O75891 902 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 PLS3P13797 630 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 CYP27A1Q02318 531 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 STAT4Q14765 748 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 TESK1Q15569 626 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 E4F1Q66K89 784 aaPredicted RBP10.04□□□□□ -0.8
LSM1-202ENST00000520286 LHFPL2Q6ZUX7 228 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 ZNF765Q7L2R6 523 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 NECAB2Q7Z6G3 386 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 DDX53Q86TM3 631 aaKnown RBP10.04□□□□□ -0.8
LSM1-202ENST00000520286 KSR1Q8IVT5 923 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 USP7Q93009 1102 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 TRIT1Q9H3H1 467 aaKnown RBP10.04□□□□□ -0.8
LSM1-202ENST00000520286 GPR27Q9NS67 375 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 CLEC1BQ9P126 229 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 SAMD15Q9P1V8 674 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 RAXQ9Y2V3 346 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 EID1Q9Y6B2 187 aa10.04□□□□□ -0.8
LSM1-202ENST00000520286 FAM170BA6NMN3 283 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 ARNTLO00327 626 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 GPR39O43194 453 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 KATNA1O75449 491 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 KCNA6P17658 529 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 LTBRP36941 435 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 RCSD1Q6JBY9 416 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 ANKLE2Q86XL3 938 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 CCDC103Q8IW40 242 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 SHISA5Q8N114 240 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 OR2W6PQ8NHA6 318 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.03□□□□□ -0.8
LSM1-202ENST00000520286 TTC1Q99614 292 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 SLC5A4Q9NY91 659 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 STOML1Q9UBI4 398 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 TCEAL9Q9UHQ7 104 aa10.03□□□□□ -0.8
LSM1-202ENST00000520286 GSTM1P09488 218 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 SCNN1BP51168 640 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 EEF1DP3Q658K8 133 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 ABHD17CQ6PCB6 329 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 ZC3H7AQ8IWR0 971 aaKnown RBP10.02□□□□□ -0.81
LSM1-202ENST00000520286 FBXL6Q8N531 539 aa10.02□□□□□ -0.81
LSM1-202ENST00000520286 PI4K2BQ8TCG2 481 aa10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 169.8 ms