RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 PHF20L1A8MW92 1017 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 KIAA0355O15063 1070 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 KDM4AO75164 1064 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 C1QL1O75973 258 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 HLA-DOAP06340 250 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 SLC3A2P08195 630 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 PDE6AP16499 860 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 FECHP22830 423 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 GYG1P46976 350 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 CLCN5P51795 746 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 LIMK1P53667 647 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 OAZ1P54368 228 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 OS9Q13438 667 aaPredicted RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 DOK7Q18PE1 504 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 TKFCQ3LXA3 575 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 TTC22Q5TAA0 569 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 AMOTL1Q8IY63 956 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 SCYL3Q8IZE3 742 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 MSL3Q8N5Y2 521 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 LPAR1Q92633 364 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 PTPN18Q99952 460 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 MAP3K20Q9NYL2 800 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 NYAP2Q9P242 653 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 SALL2Q9Y467 1007 aaPredicted RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 MYO5AQ9Y4I1 1855 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 CFAP54Q96N23 3096 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 FAM177BA6PVY3 158 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 TCERG1O14776 1098 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 TAF5LO75529 589 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 USP2O75604 605 aaPredicted RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 MYCP01106 439 aaPredicted RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 ADORA1P30542 326 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 PSMC4P43686 418 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 NKX3-2P78367 333 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 GORABQ5T7V8 394 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 DZIP1Q86YF9 867 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 RNF135Q8IUD6 432 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 MB21D1Q8N884 522 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 REPIN1Q9BWE0 567 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 RNF41Q9H4P4 317 aaPredicted RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 SLC28A3Q9HAS3 691 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 MORF4L1Q9UBU8 362 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 FAM198AQ9UFP1 575 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 PA2G4Q9UQ80 394 aaKnown RBP3.38□□□□□ -1.87
MCF2-208ENST00000519895 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.38□□□□□ -1.87
MCF2-208ENST00000519895 FBN2P35556 2912 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 GVINP1Q7Z2Y8 2422 aa3.38□□□□□ -1.87
MCF2-208ENST00000519895 A0A0G2JLL6 359 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 MAGEB6P1A0A0J9YX57 407 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 RIMBP2O15034 1052 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 IGHA2P01877 340 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 CETPP11597 493 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 KLRK1P26718 216 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 BTDP43251 543 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 GCLCP48506 637 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 C20orf194Q5TEA3 1177 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 C12orf60Q5U649 245 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 PRRT2Q7Z6L0 340 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 ABRAQ8N0Z2 381 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 MICALL1Q8N3F8 863 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 GMCL1P1Q8NEA9 526 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ZNF384Q8TF68 577 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ZCCHC14Q8WYQ9 949 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 LIN37Q96GY3 246 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 STRBPQ96SI9 672 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 NACAP1Q9BZK3 213 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 KIAA1683Q9H0B3 1180 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 MTIF3Q9H2K0 278 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 HMX1Q9NP08 348 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 PIH1D3Q9NQM4 214 aaKnown RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 TNNQ9UQP3 1299 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ZNF281Q9Y2X9 895 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 MYO16Q9Y6X6 1858 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 EFCAB14O75071 495 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 RAD17O75943 681 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ASNSP08243 561 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ZAP70P43403 619 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ANAPC15P60006 121 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 MCMDC2Q4G0Z9 681 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 USP17L2Q6R6M4 530 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 TMEM179Q6ZVK1 233 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 CRIPAKQ8N1N5 446 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 STAG1Q8WVM7 1258 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 BADQ92934 168 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 PRMT6Q96LA8 375 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 RIPOR3Q96MK2 946 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 BBC3Q96PG8 261 aaPredicted RBP3.37□□□□□ -1.87
MCF2-208ENST00000519895 CNNM2Q9H8M5 875 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 PNMA3Q9UL41 463 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 PCDHB8Q9UN66 801 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 ADAMTS5Q9UNA0 930 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 PCDHB13Q9Y5F0 798 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 FLT1P17948 1338 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 REV3LO60673 3130 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 hCG_1984214I3L0E3 225 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 NCK2O43639 380 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 HMGCRP04035 888 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 IL9P15248 144 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 CAP2P40123 477 aa3.37□□□□□ -1.87
MCF2-208ENST00000519895 TIMM10P62072 90 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms