RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OLFML2BQ68BL8 750 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 CCDC144CPQ8IYA2 1237 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 RGS22Q8NE09 1264 aa16.55■□□□□ 0.24
NUP54-216ENST00000514901 RRP36Q96EU6 259 aaKnown RBP16.55■□□□□ 0.24
NUP54-216ENST00000514901 MRPL11Q9Y3B7 192 aaKnown RBP16.55■□□□□ 0.24
NUP54-216ENST00000514901 DNAJC25-GNG10A0A024R161 153 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 CYTH3O43739 400 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 RBM25P49756 843 aaKnown RBP16.54■□□□□ 0.24
NUP54-216ENST00000514901 METAP2P50579 478 aaKnown RBP eCLIP16.54■□□□□ 0.24
NUP54-216ENST00000514901 TOB2Q14106 344 aaPredicted RBP16.54■□□□□ 0.24
NUP54-216ENST00000514901 MFSD14CQ5VZR4 134 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 TMTC3Q6ZXV5 915 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 SRBD1Q8N5C6 995 aaKnown RBP16.54■□□□□ 0.24
NUP54-216ENST00000514901 IL27Q8NEV9 243 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 SH3TC2Q8TF17 1288 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 ZNF274Q96GC6 653 aaPredicted RBP16.54■□□□□ 0.24
NUP54-216ENST00000514901 ZNF333Q96JL9 665 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 SEC63Q9UGP8 760 aaKnown RBP16.54■□□□□ 0.24
NUP54-216ENST00000514901 PLXNB2O15031 1838 aa16.54■□□□□ 0.24
NUP54-216ENST00000514901 SMCHD1A6NHR9 2005 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 ELNP15502 786 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 SLC35G1Q2M3R5 365 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 ZNF792Q3KQV3 632 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 MUM1L1Q5H9M0 696 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 HOMER1Q86YM7 354 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 MCF2L2Q86YR7 1114 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 RAB11FIP4Q86YS3 637 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 MSL3Q8N5Y2 521 aaKnown RBP16.53■□□□□ 0.24
NUP54-216ENST00000514901 NPLOC4Q8TAT6 608 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 PIGSQ96S52 555 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 A1CFQ9NQ94 594 aaKnown RBP16.53■□□□□ 0.24
NUP54-216ENST00000514901 PCDHA1Q9Y5I3 950 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 ZNF236Q9UL36 1845 aa16.53■□□□□ 0.24
NUP54-216ENST00000514901 KIAA0100Q14667 2235 aaKnown RBP16.53■□□□□ 0.24
NUP54-216ENST00000514901 NID2Q14112 1375 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 POTEB2H3BUK9 544 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 PLEKHA8P1O95397 391 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 INHAP05111 366 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 PGK2P07205 417 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 PDIA3P30101 505 aaKnown RBP16.52■□□□□ 0.24
NUP54-216ENST00000514901 NEK4P51957 841 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 USH1GQ495M9 461 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 ZNF467Q7Z7K2 595 aaPredicted RBP16.52■□□□□ 0.24
NUP54-216ENST00000514901 SAMD3Q8N6K7 520 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 CLEC4DQ8WXI8 215 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 TRIB2Q92519 343 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 MAML3Q96JK9 1138 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 CYP39A1Q9NYL5 469 aa16.52■□□□□ 0.24
NUP54-216ENST00000514901 MYH6P13533 1939 aa16.52■□□□□ 0.23
NUP54-216ENST00000514901 CCL14Q16627 93 aa16.51■□□□□ 0.23
NUP54-216ENST00000514901 NSMFQ6X4W1 530 aa16.51■□□□□ 0.23
NUP54-216ENST00000514901 FAM133AQ8N9E0 248 aa16.51■□□□□ 0.23
NUP54-216ENST00000514901 BACH2Q9BYV9 841 aa16.51■□□□□ 0.23
NUP54-216ENST00000514901 FAM217BQ9NTX9 383 aaPredicted RBP16.51■□□□□ 0.23
NUP54-216ENST00000514901 MAP3K20Q9NYL2 800 aaKnown RBP16.51■□□□□ 0.23
NUP54-216ENST00000514901 CENPFP49454 3210 aa16.51■□□□□ 0.23
NUP54-216ENST00000514901 LOC102724159A0A0B4J2E5 919 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 CCDC85CA6NKD9 419 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 NFIBO00712 420 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 IGHA2P01877 340 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 CAPN2P17655 700 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 CDC27P30260 824 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 ADD1P35611 737 aaKnown RBP16.5■□□□□ 0.23
NUP54-216ENST00000514901 BAATQ14032 418 aaPredicted RBP16.5■□□□□ 0.23
NUP54-216ENST00000514901 PWP2Q15269 919 aaKnown RBP16.5■□□□□ 0.23
NUP54-216ENST00000514901 MAP3K21Q5TCX8 1036 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 RNF207Q6ZRF8 634 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 CMTR1Q8N1G2 835 aaKnown RBP16.5■□□□□ 0.23
NUP54-216ENST00000514901 CCDC82Q8N4S0 544 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 TMEM106CQ9BVX2 250 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 FLRT1Q9NZU1 646 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 RBM27Q9P2N5 1060 aaKnown RBP16.5■□□□□ 0.23
NUP54-216ENST00000514901 NRBP1Q9UHY1 535 aa16.5■□□□□ 0.23
NUP54-216ENST00000514901 RPTORQ8N122 1335 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 PTPDC1A2A3K4 754 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 PPP1R11O60927 126 aaPredicted RBP16.49■□□□□ 0.23
NUP54-216ENST00000514901 AK2P54819 239 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 FUT2Q10981 343 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 CPLX2Q6PUV4 134 aaKnown RBP16.49■□□□□ 0.23
NUP54-216ENST00000514901 MAMDC4Q6UXC1 1216 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 PIBF1Q8WXW3 757 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 TINF2Q9BSI4 451 aa16.49■□□□□ 0.23
NUP54-216ENST00000514901 HMX1Q9NP08 348 aaPredicted RBP16.49■□□□□ 0.23
NUP54-216ENST00000514901 ADD3Q9UEY8 706 aaKnown RBP16.49■□□□□ 0.23
NUP54-216ENST00000514901 V9GY48 417 aaPredicted RBP16.49■□□□□ 0.23
NUP54-216ENST00000514901 SYNGAP1Q96PV0 1343 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 ASB14A6NK59 587 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 B4DLN1 442 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 CCL5P13501 91 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 PRKAR2AP13861 404 aaKnown RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 TAL1P17542 331 aaPredicted RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 MRPL12P52815 198 aaKnown RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 RPS6P62753 249 aaKnown RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 CNTN2Q02246 1040 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 GHRHRQ02643 423 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 CACNB2Q08289 660 aaPredicted RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 RABEP1Q15276 862 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 DNERQ8NFT8 737 aa16.48■□□□□ 0.23
NUP54-216ENST00000514901 MPHOSPH6Q99547 160 aaKnown RBP16.48■□□□□ 0.23
NUP54-216ENST00000514901 RNF208Q9H0X6 261 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms