RNA–Protein interactions for RNA: ENST00000514660.1

NEDD9-215, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 2

Gene NEDD9, Length 473 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-215ENST00000514660 POLA2Q14181 598 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 CSPP1Q1MSJ5 1256 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 TAPT1Q6NXT6 567 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 FAM133AQ8N9E0 248 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 NEK9Q8TD19 979 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 MTUS1Q9ULD2 1270 aa12.76□□□□□ -0.37
NEDD9-215ENST00000514660 MAGEB6P1A0A0J9YX57 407 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 TCRBV5S4A2TA0A5A2 114 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 CABYRO75952 493 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 TNKSO95271 1327 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 CHGBP05060 677 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 PFKMP08237 780 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 IQCF3P0C7M6 154 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 COPB2P35606 906 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 CDK8P49336 464 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 ZP2Q05996 745 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 TCF15Q12870 199 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 KMT2EQ8IZD2 1858 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 API5Q9BZZ5 524 aaKnown RBP12.75□□□□□ -0.37
NEDD9-215ENST00000514660 LMCD1Q9NZU5 365 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 HDAC5Q9UQL6 1122 aa12.75□□□□□ -0.37
NEDD9-215ENST00000514660 PLXNA3P51805 1871 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 ATP2A1O14983 1001 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 ST18O60284 1047 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 GNAI3P08754 354 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 IRS1P35568 1242 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 NOL8Q76FK4 1167 aaKnown RBP12.74□□□□□ -0.37
NEDD9-215ENST00000514660 CERS3Q8IU89 383 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 FAM9BQ8IZU0 186 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.74□□□□□ -0.37
NEDD9-215ENST00000514660 PURBQ96QR8 312 aaKnown RBP12.74□□□□□ -0.37
NEDD9-215ENST00000514660 CTAGE1Q96RT6 745 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 SLF1Q9BQI6 1058 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 C5orf42Q9H799 3197 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 SPTBN4Q9H254 2564 aa12.74□□□□□ -0.37
NEDD9-215ENST00000514660 ZNF536O15090 1300 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 LINC01553A4QN01 128 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 RAD21O60216 631 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 PDE6AP16499 860 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 ERVK-21P61565 698 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 WDR5P61964 334 aaKnown RBP12.73□□□□□ -0.37
NEDD9-215ENST00000514660 EEPD1Q7L9B9 569 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 FBXO16Q8IX29 292 aaPredicted RBP12.73□□□□□ -0.37
NEDD9-215ENST00000514660 MIER1Q8N108 512 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 SH2D4AQ9H788 454 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 ARMT1Q9H993 441 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 FAM86C1Q9NVL1 165 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 SWAP70Q9UH65 585 aa12.73□□□□□ -0.37
NEDD9-215ENST00000514660 ZNF532Q9HCE3 1301 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 E9PSI1 815 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 BCAR3O75815 825 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 NDUFB10O96000 172 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 PURAQ00577 322 aaKnown RBP12.72□□□□□ -0.37
NEDD9-215ENST00000514660 C12orf60Q5U649 245 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 TRMT2AQ8IZ69 625 aaKnown RBP12.72□□□□□ -0.37
NEDD9-215ENST00000514660 ANKRD35Q8N283 1001 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 CCDC17Q96LX7 622 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 CRNKL1Q9BZJ0 848 aaKnown RBP12.72□□□□□ -0.37
NEDD9-215ENST00000514660 SLC38A10Q9HBR0 1119 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 A1CFQ9NQ94 594 aaKnown RBP12.72□□□□□ -0.37
NEDD9-215ENST00000514660 MUTYHQ9UIF7 546 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 MYH4Q9Y623 1939 aa12.72□□□□□ -0.37
NEDD9-215ENST00000514660 KIF28PB7ZC32 967 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 F5H6K3 240 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 GNAI2P04899 355 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 ACTN1P12814 892 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 KLRC3Q07444 240 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 C16orf86Q6ZW13 317 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 SSH3Q8TE77 659 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 C17orf80Q9BSJ5 609 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 FTOQ9C0B1 505 aaKnown RBP eCLIP12.71□□□□□ -0.37
NEDD9-215ENST00000514660 KANSL2Q9H9L4 492 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 GOPCQ9HD26 462 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 HOMER2Q9NSB8 354 aa12.71□□□□□ -0.37
NEDD9-215ENST00000514660 CACNA1HO95180 2353 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 USP17L12C9JPN9 530 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 USP17L21D6R901 530 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 ANP32CO43423 234 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 SURF6O75683 361 aaKnown RBP12.7□□□□□ -0.38
NEDD9-215ENST00000514660 LTBRP36941 435 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 COL19A1Q14993 1142 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 NBPF20Q3BBV1 942 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 SLC9C2Q5TAH2 1124 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 PRPF38AQ8NAV1 312 aaKnown RBP12.7□□□□□ -0.38
NEDD9-215ENST00000514660 KIFC2Q96AC6 838 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 AP5M1Q9H0R1 490 aa12.7□□□□□ -0.38
NEDD9-215ENST00000514660 ZFHX2Q9C0A1 2572 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-215ENST00000514660 PTPRZ1P23471 2315 aaPredicted RBP12.7□□□□□ -0.38
NEDD9-215ENST00000514660 RGS20O76081 388 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 GJB5O95377 273 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 RFC2P35250 354 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 CHST13Q8NET6 341 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 DHX38Q92620 1227 aaKnown RBP12.69□□□□□ -0.38
NEDD9-215ENST00000514660 TGS1Q96RS0 853 aaKnown RBP12.69□□□□□ -0.38
NEDD9-215ENST00000514660 SEZ6LQ9BYH1 1024 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 C1orf115Q9H7X2 142 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 NOP58Q9Y2X3 529 aaKnown RBP12.69□□□□□ -0.38
NEDD9-215ENST00000514660 DCHS1Q96JQ0 3298 aa12.69□□□□□ -0.38
NEDD9-215ENST00000514660 PITPNM1O00562 1244 aa12.68□□□□□ -0.38
NEDD9-215ENST00000514660 GFRA3O60609 400 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms