RNA–Protein interactions for RNA: ENST00000514271.2

CLIP1-205, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 3,493 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-205ENST00000514271 PPP2R3AQ06190 1150 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 NOM1Q5C9Z4 860 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CCDC129Q6ZRS4 1044 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MICAL1Q8TDZ2 1067 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 DNAJC7Q99615 494 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 RASSF4Q9H2L5 321 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CREBZFQ9NS37 354 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 TRMT1Q9NXH9 659 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 ABCF2Q9UG63 623 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 LIMA1Q9UHB6 759 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CDC23Q9UJX2 597 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CLEC11AQ9Y240 323 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 DOCK1Q14185 1865 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 PEX14O75381 377 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 APPP05067 770 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 HLA-DOAP06340 250 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 FGRP09769 529 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 ERCC5P28715 1186 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 TPM4P67936 248 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MAP3K10Q02779 954 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 CTDSPL2Q05D32 466 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 LONRF3Q496Y0 759 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 APOBEC3HQ6NTF7 200 aaKnown RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 IRF2BP1Q8IU81 584 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 FAM71BQ8TC56 605 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 PIK3R5Q8WYR1 880 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 ERCC4Q92889 916 aaPredicted RBP8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MTRQ99707 1265 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 SWAP70Q9UH65 585 aa8.37□□□□□ -1.07
CLIP1-205ENST00000514271 MAGEB6P1A0A0J9YX57 407 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 ANKRD62A6NC57 917 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 CYP7A1P22680 504 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 BTDP43251 543 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 RBM5P52756 815 aaKnown RBP eCLIP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 VSNL1P62760 191 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 ALX1Q15699 326 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 COBLL1Q53SF7 1204 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 OSBP2Q969R2 916 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 ZNF396Q96N95 335 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 MTA3Q9BTC8 594 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 NACAP1Q9BZK3 213 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 SIPA1L1O43166 1804 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 PTPREP23469 700 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 ECE1P42892 770 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 MTF1Q14872 753 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 C11orf91Q3C1V1 193 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 SBK1Q52WX2 424 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 NOL9Q5SY16 702 aaKnown RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 WDR59Q6PJI9 974 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 TMC6Q7Z403 805 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 C2orf69Q8N8R5 385 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 TRPM4Q8TD43 1214 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 NAT10Q9H0A0 1025 aaKnown RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 PIH1D3Q9NQM4 214 aaKnown RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 GGA3Q9NZ52 723 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 ARPP21Q9UBL0 812 aaPredicted RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 MKRN1Q9UHC7 482 aaKnown RBP8.36□□□□□ -1.07
CLIP1-205ENST00000514271 SYNPO2Q9UMS6 1093 aa8.36□□□□□ -1.07
CLIP1-205ENST00000514271 EIF3CLB5ME19 914 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 M0R2N6 131 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SNAP23O00161 211 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 GOLIM4O00461 696 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SPTLC2O15270 562 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 PPP1R12BO60237 982 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SLC3A2P08195 630 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 PRDX5P30044 214 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 IREB2P48200 963 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 NBPF20Q3BBV1 942 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 EAPPQ56P03 285 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 TLDC1Q6P9B6 456 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 KRT26Q7Z3Y9 468 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 EIF3CQ99613 913 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 ZNF341Q9BYN7 854 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 MED4Q9NPJ6 270 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 USP40Q9NVE5 1235 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 ROBO3Q96MS0 1386 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 TMEM88BA6NKF7 163 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 MFAP3LO75121 409 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 IDH1O75874 414 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 HNRNPH3P31942 346 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 FOSBP53539 338 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 MKRN4PQ13434 485 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 MYBPC2Q14324 1141 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 TBC1D10BQ4KMP7 808 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SPECC1LQ69YQ0 1117 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 FSD1Q9BTV5 496 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 BOLA2Q9H3K6 86 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 KCNMB3Q9NPA1 279 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 FANCLQ9NW38 375 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 FOXN1O15353 648 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 FSBPO95073 299 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 ITGBL1O95965 494 aaPredicted RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 PRR29P0C7W0 189 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SFPQP23246 707 aaKnown RBP eCLIP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 INHBEP58166 350 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 CDK17Q00537 523 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 SLC9C2Q5TAH2 1124 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 ANGEL2Q5VTE6 544 aaKnown RBP8.35□□□□□ -1.07
CLIP1-205ENST00000514271 CDC42EP5Q6NZY7 148 aa8.35□□□□□ -1.07
CLIP1-205ENST00000514271 TMCO3Q6UWJ1 677 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms