RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 LRRC8AQ8IWT6 810 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 DYDC2Q96IM9 177 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 EFHD1Q9BUP0 239 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 INTS9Q9NV88 658 aaKnown RBP9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 GGA1Q9UJY5 639 aa9.54□□□□□ -0.88
LIMCH1-218ENST00000513024 KRT3P12035 628 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PICALMQ13492 652 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 POSTNQ15063 836 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 RPS6KA1Q15418 735 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 KSR1Q8IVT5 923 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PHKBQ93100 1093 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 CCDC124Q96CT7 223 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 LLPHQ9BRT6 129 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 ANKFY1Q9P2R3 1169 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 NRBP1Q9UHY1 535 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 G3BP2Q9UN86 482 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 SPDYE3A6NKU9 549 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PPIP5K2O43314 1243 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 TPD52L2O43399 206 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 CCNA1P78396 465 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PNOCQ13519 176 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 VWA3BQ502W6 1294 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PPP4R1Q8TF05 950 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 MYL10Q9BUA6 226 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 TUBB6Q9BUF5 446 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM207AQ9NSI2 230 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 BAG5Q9UL15 447 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 ZBTB21Q9ULJ3 1066 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 V9GY48 417 aaPredicted RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 ATP7AQ04656 1500 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 SEC31AO94979 1220 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 APOA1P02647 267 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PLCD1P51178 756 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 ASIC2Q16515 512 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 AKAP4Q5JQC9 854 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 TYW1BQ6NUM6 668 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 IQCDQ96DY2 449 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 IFIH1Q9BYX4 1025 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 EPS15L1Q9UBC2 864 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 STOML1Q9UBI4 398 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PPP2R2CQ9Y2T4 447 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 DNAJC6O75061 913 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PPWD1Q96BP3 646 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 PLEKHF1Q96S99 279 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 MTIF3Q9H2K0 278 aaKnown RBP9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 NDUFB9Q9Y6M9 179 aa9.53□□□□□ -0.88
LIMCH1-218ENST00000513024 NLRP1Q9C000 1473 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 GCP02774 474 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 KRT5P13647 590 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 PSMC1P62191 440 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 MYO1EQ12965 1108 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 DLGAP5Q15398 846 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 SPOUT1Q5T280 376 aaKnown RBP9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 CCDC105Q8IYK2 499 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 UBL4BQ8N7F7 174 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 FAM167BQ9BTA0 163 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 NUP58Q9BVL2 599 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 NLRC4Q9NPP4 1024 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 KIAA1468Q9P260 1216 aa9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 PACSIN2Q9UNF0 486 aaPredicted RBP9.52□□□□□ -0.88
LIMCH1-218ENST00000513024 A0A1B0GW55 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 HNRNPCL2B2RXH8 293 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 HNRNPCL1O60812 293 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L2P0CJ85 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L3P0CJ86 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L4P0CJ87 422 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L5P0CJ88 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L6P0CJ89 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4L7P0CJ90 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 TMCO5AQ8N6Q1 288 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 LRGUKQ96M69 825 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 CARD10Q9BWT7 1032 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ARHGEF10LQ9HCE6 1279 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DUX4Q9UBX2 424 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 CCDC151A5D8V7 595 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 MBD4O95243 580 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 PDHA1P08559 390 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ACTN3Q08043 901 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 KLHL30Q0D2K2 578 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 PEX26Q7Z412 305 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 C2orf69Q8N8R5 385 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 POLR3CQ9BUI4 534 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 STMN3Q9NZ72 180 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ANGEL1Q9UNK9 670 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 A0A1W2PP64 1363 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 IQCA1LA6NCM1 817 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 DEXIO95424 95 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 EPB41P11171 864 aaKnown RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 GNAT2P19087 354 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 RASA3Q14644 834 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 RPS6KA2Q15349 733 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ME3Q16798 604 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 PTPROQ16827 1216 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 ZBTB41Q5SVQ8 909 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 KCTD16Q68DU8 428 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 KRT40Q6A162 431 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 CNNM4Q6P4Q7 775 aa9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 TBC1D1Q86TI0 1168 aaPredicted RBP9.52□□□□□ -0.89
LIMCH1-218ENST00000513024 TLK2Q86UE8 772 aa9.52□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 269.6 ms