RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 ECEL1O95672 775 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 PRPSAP1Q14558 356 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 RARS2Q5T160 578 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 GJC2Q5T442 439 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 PROSER2Q86WR7 435 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 MYOCDQ8IZQ8 938 aa12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.2□□□□□ -0.462e-6■■■■■ 44.5
LIMCH1-217ENST00000512946 RIOK1Q9BRS2 568 aaKnown RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 ARMCX3Q9UH62 379 aaPredicted RBP12.2□□□□□ -0.46
LIMCH1-217ENST00000512946 IQCA1LA6NCM1 817 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 C16orf96A6NNT2 1141 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 SLFN14P0C7P3 912 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 KLC1Q07866 573 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 LRMPQ12912 555 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 CRLF3Q8IUI8 442 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF280CQ8ND82 737 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 LSM14BQ9BX40 385 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 FAM207AQ9NSI2 230 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 KLC4Q9NSK0 619 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 PODXLO00592 558 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 CAV1Q03135 178 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 TRIM50Q86XT4 487 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 DZIP3Q86Y13 1208 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 PARVBQ9HBI1 364 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 GOLGA8MH3BSY2 632 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 MYL1P05976 194 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 GCFC2P16383 781 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 YWHAGP61981 247 aaKnown RBP eCLIP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 GRIN1Q05586 938 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 KRT81Q14533 505 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 SLC35F6Q8N357 371 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 CARD10Q9BWT7 1032 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 PITPNM3Q9BZ71 974 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 STX18Q9P2W9 335 aaKnown RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 LCMT1Q9UIC8 334 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 TRIM33Q9UPN9 1127 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 MORC2Q9Y6X9 1032 aaPredicted RBP12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 EFCAB5A4FU69 1503 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 SBNO1A3KN83 1393 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 CHEK2O96017 543 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 GALNT17Q6IS24 598 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 KIRREL3Q8IZU9 778 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 STX19Q8N4C7 294 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 OSBPL1AQ9BXW6 950 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 SYBUQ9NX95 663 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 EHD2Q9NZN4 543 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 ATP11BQ9Y2G3 1177 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 PPME1Q9Y570 386 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 SESN1Q9Y6P5 492 aa12.19□□□□□ -0.46
LIMCH1-217ENST00000512946 CCDC78A2IDD5 438 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 F8W8V4 182 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 SGSM2O43147 1006 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 CCDC15Q0P6D6 951 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 MYSM1Q5VVJ2 828 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 CABP7Q86V35 215 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF229Q9UJW7 825 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF644Q9H582 1327 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 GMNCA6NCL1 334 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 SLC27A2O14975 620 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 SCG2P13521 617 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 HSPA9P38646 679 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 IL1RL1Q01638 556 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ACBD5Q5T8D3 534 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 DYDC2Q96IM9 177 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 TLK1Q9UKI8 766 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ECE1P42892 770 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 SLC17A8Q8NDX2 589 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ZBTB9Q96C00 473 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 FMO2Q99518 471 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 BLOC1S6Q9UL45 172 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 SNX14Q9Y5W7 946 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 RAB14P61106 215 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 MED21Q13503 144 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ADRM1Q16186 407 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 TSHZ3Q63HK5 1081 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 ZNF274Q96GC6 653 aaPredicted RBP12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 DACH2Q96NX9 599 aa12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 NOVA2Q9UNW9 492 aaKnown RBP12.18□□□□□ -0.46
LIMCH1-217ENST00000512946 BACH1O14867 736 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 MYO1EQ12965 1108 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 CRYMQ14894 314 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 LONRF3Q496Y0 759 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 KRT40Q6A162 431 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 IFNL2Q8IZJ0 200 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 PANX2Q96RD6 677 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 SUCLA2Q9P2R7 463 aaPredicted RBP12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 POC1B-GALNT4F8VUJ3 575 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 STAM2O75886 525 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 CD19P15391 556 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 NUGGCQ68CJ6 796 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 TTC25Q96NG3 672 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 NLRC4Q9NPP4 1024 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 ANAPC5Q9UJX4 755 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 CD2APQ9Y5K6 639 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 ANO9A1A5B4 782 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 TRMT1LQ7Z2T5 733 aaKnown RBP12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 DESI2Q9BSY9 194 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 ZMYND12Q9H0C1 365 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 C6orf229H3BNL8 230 aa12.17□□□□□ -0.46
LIMCH1-217ENST00000512946 GID8Q9NWU2 228 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms