RNA–Protein interactions for RNA: ENST00000512656.1

USP46-208, Transcript of ubiquitin specific peptidase 46, humanhuman

TSL 3

Gene USP46, Length 467 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP46-208ENST00000512656 ERVK-24P63145 666 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 JAG1P78504 1218 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 USP17L24Q0WX57 530 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 RAB3GAP1Q15042 981 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 ABCB5Q2M3G0 1257 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 FOXD4L5Q5VV16 416 aaPredicted RBP8.69□□□□□ -1.02
USP46-208ENST00000512656 TATDN1Q6P1N9 297 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 RPAP2Q8IXW5 612 aaPredicted RBP8.69□□□□□ -1.02
USP46-208ENST00000512656 PANK1Q8TE04 598 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 KIF1BPQ96EK5 621 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 PAWRQ96IZ0 340 aaKnown RBP8.69□□□□□ -1.02
USP46-208ENST00000512656 C12orf42Q96LP6 360 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 CYLDQ9NQC7 956 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 DDX19BQ9UMR2 479 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 RABGAP1Q9Y3P9 1069 aa8.69□□□□□ -1.02
USP46-208ENST00000512656 A0A1W2PPC1 479 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 RAB11FIP3O75154 756 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 POLR3DP05423 398 aaPredicted RBP8.68□□□□□ -1.02
USP46-208ENST00000512656 ZKSCAN1P17029 563 aaPredicted RBP8.68□□□□□ -1.02
USP46-208ENST00000512656 CYP2B6P20813 491 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 SLC9C2Q5TAH2 1124 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 LYSMD3Q7Z3D4 306 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 PLEKHH3Q7Z736 793 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 GPR161Q8N6U8 529 aaKnown RBP8.68□□□□□ -1.02
USP46-208ENST00000512656 RHPN1Q8TCX5 695 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP46-208ENST00000512656 PAGR1Q9BTK6 254 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 KIAA1683Q9H0B3 1180 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 IL1RAPL2Q9NP60 686 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 RBPJLQ9UBG7 517 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 ATAD5Q96QE3 1844 aa8.68□□□□□ -1.02
USP46-208ENST00000512656 PDE6AP16499 860 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 KRT76Q01546 638 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 SHROOM1Q2M3G4 852 aaPredicted RBP8.67□□□□□ -1.02
USP46-208ENST00000512656 MAP3K21Q5TCX8 1036 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 SV2AQ7L0J3 742 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 GPR142Q7Z601 462 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 DOCK3Q8IZD9 2030 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 TRIB2Q92519 343 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 APBA2Q99767 749 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 RIOK1Q9BRS2 568 aaKnown RBP8.67□□□□□ -1.02
USP46-208ENST00000512656 DDX24Q9GZR7 859 aaKnown RBP eCLIP8.67□□□□□ -1.02
USP46-208ENST00000512656 ANTXR1Q9H6X2 564 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 TXNRD2Q9NNW7 524 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 MCM9Q9NXL9 1143 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 IVNS1ABPQ9Y6Y0 642 aa8.67□□□□□ -1.02
USP46-208ENST00000512656 ZNF532Q9HCE3 1301 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 GOLIM4O00461 696 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 MPHOSPH10O00566 681 aaKnown RBP8.66□□□□□ -1.02
USP46-208ENST00000512656 GPR37L1O60883 481 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 VCAM1P19320 739 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 SHMT1P34896 483 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 PLCD1P51178 756 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 ZYXQ15942 572 aaKnown RBP8.66□□□□□ -1.02
USP46-208ENST00000512656 WDR78Q5VTH9 848 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 MFSD14CQ5VZR4 134 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 LBX2Q6XYB7 198 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 CATSPERGQ6ZRH7 1159 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 AMOTL1Q8IY63 956 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 USP6NLQ92738 828 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 GMCL1Q96IK5 515 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 DNAJC2Q99543 621 aaKnown RBP8.66□□□□□ -1.02
USP46-208ENST00000512656 PORCNQ9H237 461 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 C11orf49Q9H6J7 331 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 HOXC10Q9NYD6 342 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 SWAP70Q9UH65 585 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 OGDHLQ9ULD0 1010 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 SIPA1L1O43166 1804 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 FOCADQ5VW36 1801 aa8.66□□□□□ -1.02
USP46-208ENST00000512656 SLC15A5A6NIM6 579 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 GABPAQ06546 454 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 CACNB2Q08289 660 aaPredicted RBP8.65□□□□□ -1.02
USP46-208ENST00000512656 TMEM179Q6ZVK1 233 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 CYP2U1Q7Z449 544 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 ACER1Q8TDN7 264 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 DIS3LQ8TF46 1054 aaKnown RBP8.65□□□□□ -1.02
USP46-208ENST00000512656 EDC3Q96F86 508 aaKnown RBP8.65□□□□□ -1.02
USP46-208ENST00000512656 CNTNAP3BQ96NU0 1288 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 COL25A1Q9BXS0 654 aaPredicted RBP8.65□□□□□ -1.02
USP46-208ENST00000512656 CNTNAP3Q9BZ76 1288 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 PRO3102Q9H379 93 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 RPAP3Q9H6T3 665 aaPredicted RBP8.65□□□□□ -1.02
USP46-208ENST00000512656 SH2D4AQ9H788 454 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 ATP8A2Q9NTI2 1148 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 ZBTB40Q9NUA8 1239 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 PAG1Q9NWQ8 432 aa8.65□□□□□ -1.02
USP46-208ENST00000512656 CUL9Q8IWT3 2517 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 MYH1P12882 1939 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 CDK5RAP2Q96SN8 1893 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 SZT2Q5T011 3432 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 TCRBV5S4A2TA0A5A2 114 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 STRNO43815 780 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 MSCO60682 206 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 PEX10O60683 326 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 ATP5JP18859 108 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 ATP2B2Q01814 1243 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 COG2Q14746 738 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 SEPT2Q15019 361 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 ZSCAN25Q6NSZ9 544 aa8.64□□□□□ -1.03
USP46-208ENST00000512656 C7orf61Q8IZ16 206 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms