RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 TIAM2Q8IVF5 1701 aa10.35□□□□□ -0.75
LIMCH1-215ENST00000512632 PDS5AQ29RF7 1337 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 MYH3P11055 1940 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 TECP42680 631 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 ATP2B2Q01814 1243 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CCDC42Q96M95 316 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 THAP9Q9H5L6 903 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 RABEP2Q9H5N1 569 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 TCP11L1Q9NUJ3 509 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 KBTBD4Q9NVX7 518 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 LRWD1Q9UFC0 647 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF652Q9Y2D9 606 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 RHOBTB3O94955 611 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 KIF5AQ12840 1032 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CCDC96Q2M329 555 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 P2RX5Q93086 422 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 FAM207AQ9NSI2 230 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 SAP30BPQ9UHR5 308 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CHD4Q14839 1912 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 COL4A1P02462 1669 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CCNT1O60563 726 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 TUBBP07437 444 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 DIXDC1Q155Q3 683 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 EZH2Q15910 746 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 SRLQ86TD4 932 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CRACR2AQ9BSW2 395 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 SMARCAL1Q9NZC9 954 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 ARPP21Q9UBL0 812 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 SHANK3Q9BYB0 1731 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 MYH6P13533 1939 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 SYF2O95926 243 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 TSPY3P0CV98 308 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 TSPY8P0CW00 308 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 CXCR5P32302 372 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 KCNB1Q14721 858 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 PAPD7Q5XG87 772 aaKnown RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF444Q8N0Y2 327 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 RASSF4Q9H2L5 321 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 MMRN2Q9H8L6 949 aa10.34□□□□□ -0.75
LIMCH1-215ENST00000512632 ZNF263O14978 683 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 CCNE1P24864 410 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 SF3B3Q15393 1217 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 C2CD5Q86YS7 1000 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 HDAC7Q8WUI4 952 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 TRIM9Q9C026 710 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 CCSER1Q9C0I3 900 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 MLXIPQ9HAP2 919 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 NAPAP54920 295 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 ZBED6P86452 979 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 GGCXP38435 758 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 SPA17Q15506 151 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 LRRC31Q6UY01 552 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 DYMQ7RTS9 669 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 DGKHQ86XP1 1220 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 CCDC47Q96A33 483 aaKnown RBP10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 MAD2L2Q9UI95 211 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 BCL9LQ86UU0 1499 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 KLRF2D3W0D1 207 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 EPHB6O15197 1021 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 TXKP42681 527 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 DNA2P51530 1060 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 SLC7A5Q01650 507 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 MAP9Q49MG5 647 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 MARCH10Q8NA82 808 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 SMARCC1Q92922 1105 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 DHTKD1Q96HY7 919 aaPredicted RBP10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 MED4Q9NPJ6 270 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 EHD2Q9NZN4 543 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 HPCAL4Q9UM19 191 aa10.33□□□□□ -0.76
LIMCH1-215ENST00000512632 DISP2A7MBM2 1401 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 MEA1Q16626 185 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 C12orf60Q5U649 245 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 AFAP1L1Q8TED9 768 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 SH3RF3Q8TEJ3 882 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 COG1Q8WTW3 980 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 TGFBRAP1Q8WUH2 860 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 SECISBP2LQ93073 1101 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 TMEM47Q9BQJ4 181 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 TTYH3Q9C0H2 523 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 DEF6Q9H4E7 631 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 DMGDHQ9UI17 866 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 CAPN6Q9Y6Q1 641 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 NUTM2BA6NNL0 878 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 NUTM2EB1AL46 878 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 EIF3CLB5ME19 914 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 STXBP3O00186 592 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 CKAP4Q07065 602 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 GRIK5Q16478 980 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 USP17L2Q6R6M4 530 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 CCNI2Q6ZMN8 369 aaPredicted RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 MAPKAPK5Q8IW41 473 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 EIF3CQ99613 913 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 DUOX1Q9NRD9 1551 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 M0R2N6 131 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 AKR1B10O60218 316 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 MOCS3O95396 460 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 IVLP07476 585 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 SBK1Q52WX2 424 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 TBC1D9BQ66K14 1250 aa10.32□□□□□ -0.76
LIMCH1-215ENST00000512632 NLRP3Q96P20 1036 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms