RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SLC12A4Q9UP95 1085 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 ASB3Q9Y575 518 aa13.29□□□□□ -0.28
LIMCH1-213ENST00000511496 KDM6AO15550 1401 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 HMGB1P09429 215 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 SP100P23497 879 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 ERCC5P28715 1186 aaPredicted RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 CTNNA1P35221 906 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 KLC1Q07866 573 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 TRPM8Q7Z2W7 1104 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 CCDC155Q8N6L0 562 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 ADAM22Q9P0K1 906 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 CD2APQ9Y5K6 639 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 EID1Q9Y6B2 187 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 MYO3AQ8NEV4 1616 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 CHD2O14647 1828 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 VIMP08670 466 aaKnown RBP13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 LZTS2Q9BRK4 669 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 ZWILCHQ9H900 591 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 COL15A1P39059 1388 aa13.28□□□□□ -0.28
LIMCH1-213ENST00000511496 PPP6R2O75170 966 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 ALDH1B1P30837 517 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 RAD23BP54727 409 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 SFSWAPQ12872 951 aaKnown RBP13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 IFI16Q16666 785 aaKnown RBP13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 CDK19Q9BWU1 502 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 MLXIPQ9HAP2 919 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 USH1CQ9Y6N9 552 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 GOLGA8BA8MQT2 603 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 ORC4O43929 436 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 DEUP1Q05D60 604 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 CD302Q8IX05 232 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 UBLCP1Q8WVY7 318 aaPredicted RBP13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 SAMD15Q9P1V8 674 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 TRIM33Q9UPN9 1127 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 CTNND2Q9UQB3 1225 aa13.27□□□□□ -0.28
LIMCH1-213ENST00000511496 GOLGA6L10A0A0M3HER8 536 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 ANO9A1A5B4 782 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 MOCS3O95396 460 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 FUT4P22083 530 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 FECHP22830 423 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 MSH2P43246 934 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 SLC39A6Q13433 755 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 PHC3Q8NDX5 983 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 STAMQ92783 540 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 ZNF274Q96GC6 653 aaPredicted RBP13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 VCXQ9H320 206 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 CAPN6Q9Y6Q1 641 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 DLG5Q8TDM6 1919 aa13.27□□□□□ -0.29
LIMCH1-213ENST00000511496 KLF18A0A0U1RQI7 1052 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 TACC1O75410 805 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 SASH1O94885 1247 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 GSTA1P08263 222 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 PTPAQ15257 358 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 KRT26Q7Z3Y9 468 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 FNBP4Q8N3X1 1017 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 ANKRD13CQ8N6S4 541 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 FBF1Q8TES7 1133 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 CASKIN2Q8WXE0 1202 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 SELENOSQ9BQE4 189 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 C9orf78Q9NZ63 289 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 LRWD1Q9UFC0 647 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 PHF24Q9UPV7 400 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 LRRC10BA6NIK2 292 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 H0Y3Z8 333 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 MBD4O95243 580 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 FAM200BP0CF97 657 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 COPB1P53618 953 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 MKRN4PQ13434 485 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 TTF1Q15361 905 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 RASIP1Q5U651 963 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 TCERG1LQ5VWI1 586 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 CEP128Q6ZU80 1094 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 KRI1Q8N9T8 703 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 KRT12Q99456 494 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 NKX1-2Q9UD57 310 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 BZW2Q9Y6E2 419 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 NEURL4Q96JN8 1562 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 CAPN15O75808 1086 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 ALADP13716 330 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 EIF4BP23588 611 aaKnown RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 CYLC1P35663 651 aaPredicted RBP13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 NCALDP61601 193 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 SFMBT2Q5VUG0 894 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 SWAP70Q9UH65 585 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 PHF8Q9UPP1 1060 aa13.26□□□□□ -0.29
LIMCH1-213ENST00000511496 PI4KAP2A4QPH2 592 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 E7EWF7 191 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 IFIT3O14879 490 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ANXA1P04083 346 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 SHBGP04278 402 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 HSD17B3P37058 310 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 EXOSC10Q01780 885 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 KRT71Q3SY84 523 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 HDGFL1Q5TGJ6 251 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 RNF168Q8IYW5 571 aaPredicted RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 PI4KAP1Q8N8J0 262 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 ALG1Q9BT22 464 aa13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 MOV10L1Q9BXT6 1211 aaKnown RBP13.25□□□□□ -0.29
LIMCH1-213ENST00000511496 KCNMB3Q9NPA1 279 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms