RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 RTL9Q8NET4 1388 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 A0A1W2PQJ5 194 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 PRKAB2O43741 272 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 USO1O60763 962 aaKnown RBP19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 GUCY1A3Q02108 690 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 NEDD9Q14511 834 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 SPA17Q15506 151 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 CCDC96Q2M329 555 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 PREPLQ4J6C6 727 aaPredicted RBP19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 FIGNQ5HY92 759 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 TTI2Q6NXR4 508 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 NFRKBQ6P4R8 1299 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 KRT26Q7Z3Y9 468 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 CD302Q8IX05 232 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 KLC4Q9NSK0 619 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 MCM8Q9UJA3 840 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 BCORQ6W2J9 1755 aa19.03■□□□□ 0.64
SQSTM1-211ENST00000506690 hCG_1642624A0A1W2PR95 340 aa19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 SRRM3A6NNA2 597 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 KCNB1Q14721 858 aa19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 C1orf131Q8NDD1 294 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 NOC3LQ8WTT2 800 aaKnown RBP19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 TRIM47Q96LD4 638 aa19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 CCDC42Q96M95 316 aa19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 UBAC1Q9BSL1 405 aa19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 V9GY48 417 aaPredicted RBP19.02■□□□□ 0.64
SQSTM1-211ENST00000506690 PDE8BO95263 885 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 TDO2P48775 406 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 C8orf74Q6P047 294 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 MREGQ8N565 214 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 ZBTB38Q8NAP3 1195 aaPredicted RBP19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 CCT8L2Q96SF2 557 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 NACAP1Q9BZK3 213 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 RNF41Q9H4P4 317 aaPredicted RBP19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 MLXIPQ9HAP2 919 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 GDF3Q9NR23 364 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 KCPQ6ZWJ8 1503 aa19.02■□□□□ 0.63
SQSTM1-211ENST00000506690 MOCS3O95396 460 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 ITGA6P23229 1130 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 HNRNPH3P31942 346 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 TRAPPC10P48553 1259 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 TBC1D8BQ0IIM8 1120 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CCDC40Q4G0X9 1142 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CFAP58Q5T655 872 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CCDC13Q8IYE1 715 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 BANK1Q8NDB2 785 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 MYCBPAPQ8TBZ2 947 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CCDC43Q96MW1 224 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 IFIH1Q9BYX4 1025 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 SMARCAL1Q9NZC9 954 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 PCDHA13Q9Y5I0 950 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 COL18A1P39060 1754 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 TNKSO95271 1327 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 PSMA7O14818 248 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 LCA5LO95447 670 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 GNAT2P19087 354 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 NR1D1P20393 614 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 MAP3K12Q12852 859 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 DRP2Q13474 957 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 WLSQ5T9L3 541 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CCDC181Q5TID7 509 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 C6orf89Q6UWU4 347 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 NLRP14Q86W24 1093 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 GIMAP7Q8NHV1 300 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 PIK3R5Q8WYR1 880 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 PRDM11Q9NQV5 511 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 CNNM1Q9NRU3 951 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 RBM12Q9NTZ6 932 aaKnown RBP19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 EHD2Q9NZN4 543 aa19.01■□□□□ 0.63
SQSTM1-211ENST00000506690 PNPLA7Q6ZV29 1317 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 KLRC4O43908 158 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 PLEKP08567 350 aaPredicted RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 RDXP35241 583 aaKnown RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 LONP1P36776 959 aaKnown RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 MDH1P40925 334 aaKnown RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 IFT20Q8IY31 132 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 GIMAP8Q8ND71 665 aaPredicted RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 DUSP9Q99956 384 aaKnown RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 GREM2Q9H772 168 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 PLEKHA8P1O95397 391 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 FAM107AO95990 144 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 CXCR5P32302 372 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 STAT6P42226 847 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 PAFAH1B1P43034 410 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 ARL6IP4Q66PJ3 421 aaKnown RBP19■□□□□ 0.63
SQSTM1-211ENST00000506690 LCORLQ8N3X6 602 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 SPATA5Q8NB90 893 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 ERGIC2Q96RQ1 377 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 PLAGL2Q9UPG8 496 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 SLC4A4Q9Y6R1 1079 aa19■□□□□ 0.63
SQSTM1-211ENST00000506690 RHOBTB3O94955 611 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 FAM153BP0C7A2 387 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 HDLBPQ00341 1268 aaKnown RBP18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 SEMA3FQ13275 785 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 FAM153CQ494X1 144 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 NAALADL2Q58DX5 795 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 ZSCAN29Q8IWY8 852 aaPredicted RBP18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 ALS2CR12Q96Q35 445 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 POLD4Q9HCU8 107 aa18.99■□□□□ 0.63
SQSTM1-211ENST00000506690 ARHGAP20Q9P2F6 1191 aa18.99■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms