RNA–Protein interactions for RNA: ENST00000498725.5

CCDC171-209, Transcript of coiled-coil domain containing 171, humanhuman

TSL 3

Gene CCDC171, Length 498 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-209ENST00000498725 PTPRSQ13332 1948 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 GRIN2DO15399 1336 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 GTPBP6O43824 516 aaPredicted RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 CA3P07451 260 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 PRR29P0C7W0 189 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 RASA1P20936 1047 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 IKQ13123 557 aaPredicted RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 TTLL4Q14679 1199 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 FSCN1Q16658 493 aaKnown RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 HSP90AB4PQ58FF6 505 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 TMEM63BQ5T3F8 832 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 RPUSD2Q8IZ73 545 aaKnown RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 LRRC47Q8N1G4 583 aaKnown RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 PANK1Q8TE04 598 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 KATNBL1Q9H079 304 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 PUS7LQ9H0K6 701 aaKnown RBP10.92□□□□□ -0.66
CCDC171-209ENST00000498725 PDGFCQ9NRA1 345 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 FBXO40Q9UH90 709 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 BDP1A6H8Y1 2624 aa10.92□□□□□ -0.66
CCDC171-209ENST00000498725 SOWAHBA6NEL2 793 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 EPOPA6NHQ4 379 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 PRDM1O75626 825 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 CYP2C9P11712 490 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 SNAP25P60880 206 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 TMEM67Q5HYA8 995 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 SLC43A3Q8NBI5 491 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 CHST13Q8NET6 341 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 PPIL4Q8WUA2 492 aaKnown RBP eCLIP10.91□□□□□ -0.66
CCDC171-209ENST00000498725 ARNTL2Q8WYA1 636 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 KIF1BPQ96EK5 621 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 AGBL1Q96MI9 1066 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 SLC38A10Q9HBR0 1119 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 NYAP2Q9P242 653 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 COG6Q9Y2V7 657 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 MTCH2Q9Y6C9 303 aa10.91□□□□□ -0.66
CCDC171-209ENST00000498725 TANC1Q9C0D5 1861 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 TMEM232C9JQI7 657 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ATP2A1O14983 1001 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ERC2O15083 957 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ZEB2O60315 1214 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 GABBR2O75899 941 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 CABYRO75952 493 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ALAS1P13196 640 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 SMPD1P17405 629 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 FAM47CQ5HY64 1035 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 TMEM31Q5JXX7 168 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 FBXO16Q8IX29 292 aaPredicted RBP10.9□□□□□ -0.66
CCDC171-209ENST00000498725 KHSRPQ92945 711 aaKnown RBP eCLIP10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ACAD9Q9H845 621 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 RNF146Q9NTX7 359 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 TRMT13Q9NUP7 481 aaKnown RBP10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ARPP21Q9UBL0 812 aaPredicted RBP10.9□□□□□ -0.66
CCDC171-209ENST00000498725 FEM1BQ9UK73 627 aa10.9□□□□□ -0.66
CCDC171-209ENST00000498725 PRRC2BQ5JSZ5 2229 aaKnown RBP10.9□□□□□ -0.66
CCDC171-209ENST00000498725 ZBED9Q6R2W3 1325 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 TRIP12Q14669 1992 aaPredicted RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 ASB14A6NK59 587 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 ARHGEF15O94989 841 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 MYL3P08590 195 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 BMP3P12645 472 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 CHMP4BP1P59074 171 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 SLFN13Q68D06 897 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 KIAA1211Q6ZU35 1233 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 SPRED2Q7Z698 418 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 ZNF444Q8N0Y2 327 aaPredicted RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 FAM133AQ8N9E0 248 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 VWCEQ96DN2 955 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 CEP95Q96GE4 821 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 TRERF1Q96PN7 1200 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 PURBQ96QR8 312 aaKnown RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 FTOQ9C0B1 505 aaKnown RBP eCLIP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 ALDH8A1Q9H2A2 487 aaPredicted RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 A1CFQ9NQ94 594 aaKnown RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 MTMR7Q9Y216 660 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 GNEQ9Y223 722 aaKnown RBP10.89□□□□□ -0.67
CCDC171-209ENST00000498725 TRANK1O15050 2925 aa10.89□□□□□ -0.67
CCDC171-209ENST00000498725 XIRP2A4UGR9 3374 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 RBAK-RBAKDNI3L0D1 243 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 TLL1O43897 1013 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 APPP05067 770 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 ATP5JP18859 108 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 UBE3CQ15386 1083 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 MUM1L1Q5H9M0 696 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 ZSCAN25Q6NSZ9 544 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 NSMFQ6X4W1 530 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 HLA-CQ95604 372 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 HAUS7Q99871 368 aa10.88□□□□□ -0.67
CCDC171-209ENST00000498725 TNKSO95271 1327 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 GSG1L2A8MUP6 293 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 ACTN1P12814 892 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 TDO2P48775 406 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 NKX3-2P78367 333 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 TAP1Q03518 808 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 SBK1Q52WX2 424 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 IQSEC1Q6DN90 963 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 TAPT1Q6NXT6 567 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 KCTD1Q719H9 257 aa10.87□□□□□ -0.67
CCDC171-209ENST00000498725 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.87□□□□□ -0.67
CCDC171-209ENST00000498725 TMCO2Q7Z6W1 182 aaPredicted RBP10.87□□□□□ -0.67
CCDC171-209ENST00000498725 ALYREFQ86V81 257 aaKnown RBP10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms