RNA–Protein interactions for RNA: ENST00000498540.2

TRAF4-212, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 748 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-212ENST00000498540 ITGA7Q13683 1181 aa17.5■□□□□ 0.39
TRAF4-212ENST00000498540 FSCN1Q16658 493 aaKnown RBP17.5■□□□□ 0.39
TRAF4-212ENST00000498540 OTOP2Q7RTS6 562 aa17.5■□□□□ 0.39
TRAF4-212ENST00000498540 NEDD1Q8NHV4 660 aa17.5■□□□□ 0.39
TRAF4-212ENST00000498540 ASB2Q96Q27 587 aa17.5■□□□□ 0.39
TRAF4-212ENST00000498540 CHMP4BQ9H444 224 aaKnown RBP17.5■□□□□ 0.39
TRAF4-212ENST00000498540 REV3LO60673 3130 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 FGBP02675 491 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 ZFYP08048 801 aaPredicted RBP17.49■□□□□ 0.39
TRAF4-212ENST00000498540 TSPY3P0CV98 308 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 TSPY8P0CW00 308 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 FDX1P10109 184 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 SMPD1P17405 629 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 IGFBP4P22692 258 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 CCL23P55773 120 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 TMEM63BQ5T3F8 832 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 C20orf194Q5TEA3 1177 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 RASGRP2Q7LDG7 609 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 IFNL3Q8IZI9 196 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 ADAMTS19Q8TE59 1207 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 NOC4LQ9BVI4 516 aaKnown RBP17.49■□□□□ 0.39
TRAF4-212ENST00000498540 TRPV6Q9H1D0 765 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 WNT8AQ9H1J5 351 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 PDGFCQ9NRA1 345 aa17.49■□□□□ 0.39
TRAF4-212ENST00000498540 ASB14A6NK59 587 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 PATL2C9JE40 543 aaKnown RBP17.48■□□□□ 0.39
TRAF4-212ENST00000498540 B4GALT4O60513 344 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 CABYRO75952 493 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 ALAS1P13196 640 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 SNAP25P60880 206 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 PSMC6P62333 389 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 TFAP4Q01664 338 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 IKQ13123 557 aaPredicted RBP17.48■□□□□ 0.39
TRAF4-212ENST00000498540 MUM1L1Q5H9M0 696 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 EEPD1Q7L9B9 569 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 FAM160B2Q86V87 743 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 FBXO16Q8IX29 292 aaPredicted RBP17.48■□□□□ 0.39
TRAF4-212ENST00000498540 STAG1Q8WVM7 1258 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 GMCL1Q96IK5 515 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 TRERF1Q96PN7 1200 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 SEC62Q99442 399 aaKnown RBP17.48■□□□□ 0.39
TRAF4-212ENST00000498540 MTIF3Q9H2K0 278 aaKnown RBP17.48■□□□□ 0.39
TRAF4-212ENST00000498540 SLC28A3Q9HAS3 691 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 RAPGEFL1Q9UHV5 662 aa17.48■□□□□ 0.39
TRAF4-212ENST00000498540 DYNC1LI2O43237 492 aaPredicted RBP17.47■□□□□ 0.39
TRAF4-212ENST00000498540 MCCP23508 829 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 SLC1A4P43007 532 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 RABGGTBP53611 331 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 PDE4BQ07343 736 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 TAPT1Q6NXT6 567 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 KCTD1Q719H9 257 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 CHURC1Q8WUH1 139 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 VWCEQ96DN2 955 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 GPATCH3Q96I76 525 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 AP5M1Q9H0R1 490 aa17.47■□□□□ 0.39
TRAF4-212ENST00000498540 MYOGP15173 224 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 MRPS5P82675 430 aaKnown RBP17.46■□□□□ 0.39
TRAF4-212ENST00000498540 PPARAQ07869 468 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 TKFCQ3LXA3 575 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 SCLYQ96I15 445 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 PURBQ96QR8 312 aaKnown RBP17.46■□□□□ 0.39
TRAF4-212ENST00000498540 CYP39A1Q9NYL5 469 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 SCN5AQ14524 2016 aa17.46■□□□□ 0.39
TRAF4-212ENST00000498540 NCOR1O75376 2440 aa17.46■□□□□ 0.38
TRAF4-212ENST00000498540 BDP1A6H8Y1 2624 aa17.45■□□□□ 0.38
TRAF4-212ENST00000498540 ZEB2O60315 1214 aa17.45■□□□□ 0.38
TRAF4-212ENST00000498540 UHRF1Q96T88 793 aaPredicted RBP17.45■□□□□ 0.38
TRAF4-212ENST00000498540 NACAP1Q9BZK3 213 aa17.45■□□□□ 0.38
TRAF4-212ENST00000498540 NAPBQ9H115 298 aa17.45■□□□□ 0.38
TRAF4-212ENST00000498540 PRR12Q9ULL5 1215 aa17.45■□□□□ 0.38
TRAF4-212ENST00000498540 TCF20Q9UGU0 1960 aaKnown RBP17.45■□□□□ 0.38
TRAF4-212ENST00000498540 NMT2O60551 498 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 PLA2G6O60733 806 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 PPP2R2DQ66LE6 453 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 IQSEC1Q6DN90 963 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 NSMFQ6X4W1 530 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 SEZ6LQ9BYH1 1024 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 ALDH8A1Q9H2A2 487 aaPredicted RBP17.44■□□□□ 0.38
TRAF4-212ENST00000498540 DCTPP1Q9H773 170 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 INCENPQ9NQS7 918 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 IL17RBQ9NRM6 502 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 RCAN3Q9UKA8 241 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 STX8Q9UNK0 236 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 Q9Y3F1 56 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 SLC4A7Q9Y6M7 1214 aa17.44■□□□□ 0.38
TRAF4-212ENST00000498540 TRANK1O15050 2925 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 ZBBXA8MT70 800 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 FOXP2O15409 715 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 SLC3A2P08195 630 aaKnown RBP17.43■□□□□ 0.38
TRAF4-212ENST00000498540 RCSD1Q6JBY9 416 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 KIAA1211Q6ZU35 1233 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 MICALL1Q8N3F8 863 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 MORC4Q8TE76 937 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 VTA1Q9NP79 307 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 TRMT13Q9NUP7 481 aaKnown RBP17.43■□□□□ 0.38
TRAF4-212ENST00000498540 CCPG1Q9ULG6 757 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 MTMR7Q9Y216 660 aa17.43■□□□□ 0.38
TRAF4-212ENST00000498540 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.43■□□□□ 0.38
TRAF4-212ENST00000498540 TANC1Q9C0D5 1861 aa17.42■□□□□ 0.38
TRAF4-212ENST00000498540 CYP2C9P11712 490 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms