RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 MORC1Q86VD1 984 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 NPAS4Q8IUM7 802 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 PAPPAQ13219 1627 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 PARD3Q8TEW0 1356 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 LY75O60449 1722 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 COL3A1P02461 1466 aaPredicted RBP6.52□□□□□ -1.37
CSMD3-208ENST00000497026 ITGB4P16144 1822 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 IGSF1Q8N6C5 1336 aa6.52□□□□□ -1.37
CSMD3-208ENST00000497026 LMNB1P20700 586 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 ETF1P62495 437 aaKnown RBP6.51□□□□□ -1.37
CSMD3-208ENST00000497026 PSMD2Q13200 908 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 ZNF792Q3KQV3 632 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 CC2D1BQ5T0F9 858 aaKnown RBP6.51□□□□□ -1.37
CSMD3-208ENST00000497026 DNAJC14Q6Y2X3 702 aaPredicted RBP6.51□□□□□ -1.37
CSMD3-208ENST00000497026 STK11IPQ8N1F8 1099 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 ZNF507Q8TCN5 953 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 KAT6BQ8WYB5 2073 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 CNTNAP4Q9C0A0 1308 aa6.51□□□□□ -1.37
CSMD3-208ENST00000497026 PLSCR1O15162 318 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 EOMESO95936 686 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 LIG3P49916 1009 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 ZCRB1Q8TBF4 217 aaKnown RBP6.5□□□□□ -1.37
CSMD3-208ENST00000497026 XAGE3Q8WTP9 111 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 RAPGEF4Q8WZA2 1011 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 JARID2Q92833 1246 aaPredicted RBP6.5□□□□□ -1.37
CSMD3-208ENST00000497026 MISP3Q96FF7 219 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 HRASLS5Q96KN8 279 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 PRDM7Q9NQW5 492 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 ADAMTS6Q9UKP5 1117 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 TLR6Q9Y2C9 796 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 LRP5O75197 1615 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 CASZ1Q86V15 1759 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 KDRP35968 1356 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 PLEKHG2Q9H7P9 1386 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 TMEM265A0A087WTH1 108 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 CYP27B1O15528 508 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 SLITRK5O94991 958 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 GRK4P32298 578 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 PRKCQQ04759 706 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 SLBPQ14493 270 aaKnown RBP eCLIP6.5□□□□□ -1.37
CSMD3-208ENST00000497026 MIPEPQ99797 713 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 WNT10AQ9GZT5 417 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 GZF1Q9H116 711 aaPredicted RBP6.5□□□□□ -1.37
CSMD3-208ENST00000497026 GTF2IRD1Q9UHL9 959 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 VAV3Q9UKW4 847 aa6.5□□□□□ -1.37
CSMD3-208ENST00000497026 VIRMAQ69YN4 1812 aaKnown RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 TUBGCP6Q96RT7 1819 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 PCDH11XQ9BZA7 1347 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 PCDH11YQ9BZA8 1340 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 FANCIQ9NVI1 1328 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 PRR33A8MZF0 331 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 RNASE1P07998 156 aaKnown RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 CTSHP09668 335 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 TFE3P19532 575 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 IL13P35225 146 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 MTHFSP49914 203 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 DAB2P98082 770 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 SCARA3Q6AZY7 606 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 KCT2Q8NC54 265 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 RIN3Q8TB24 985 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 UBE2Q2Q8WVN8 375 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 DPH2Q9BQC3 489 aaPredicted RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 FOXQ1Q9C009 403 aa6.49□□□□□ -1.37
CSMD3-208ENST00000497026 MBNL3Q9NUK0 354 aaKnown RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 TPX2Q9ULW0 747 aaKnown RBP6.49□□□□□ -1.37
CSMD3-208ENST00000497026 TAF1LQ8IZX4 1826 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 LRIG2O94898 1065 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 FUT4P22083 530 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 CNGB1Q14028 1251 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-208ENST00000497026 R3HDM1Q15032 1099 aaKnown RBP6.48□□□□□ -1.37
CSMD3-208ENST00000497026 TXNRD1Q16881 649 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 NKPD1Q17RQ9 610 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 AGMOQ6ZNB7 445 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 SPACA3Q8IXA5 215 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 PI4K2BQ8TCG2 481 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 RC3H2Q9HBD1 1191 aaKnown RBP6.48□□□□□ -1.37
CSMD3-208ENST00000497026 MKNK2Q9HBH9 465 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 PRDM5Q9NQX1 630 aaPredicted RBP6.48□□□□□ -1.37
CSMD3-208ENST00000497026 SNCAIPQ9Y6H5 919 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 ADAMTS7Q9UKP4 1686 aa6.48□□□□□ -1.37
CSMD3-208ENST00000497026 QSER1Q2KHR3 1735 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 SCN11AQ9UI33 1791 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 C5P01031 1676 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 GNAT3A8MTJ3 354 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 GFRA2O00451 464 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 ITGB5P18084 799 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 RPS26P62854 115 aaKnown RBP6.47□□□□□ -1.37
CSMD3-208ENST00000497026 FGD1P98174 961 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 IKZF1Q13422 519 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 CDKAL1Q5VV42 579 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 PRAMEF13Q5VWM6 474 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 FBXO33Q7Z6M2 555 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 HID1Q8IV36 788 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 KRTAP4-5Q9BYR2 181 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 MIR1-1HGQ9H1L0 117 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 TNKS2Q9H2K2 1166 aa6.47□□□□□ -1.37
CSMD3-208ENST00000497026 KDM6AO15550 1401 aaPredicted RBP6.47□□□□□ -1.37
CSMD3-208ENST00000497026 IGF2BP3O00425 579 aaKnown RBP eCLIP6.46□□□□□ -1.38
CSMD3-208ENST00000497026 PAPLNO95428 1278 aa6.46□□□□□ -1.38
CSMD3-208ENST00000497026 PHKG2P15735 406 aa6.46□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms