RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 LGSNQ5TDP6 509 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 CCDC110Q8TBZ0 833 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 PIGBQ92521 554 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 SERPINB13Q9UIV8 391 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 AKT3Q9Y243 479 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 BRD2P25440 801 aaKnown RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 CCDC127Q96BQ5 260 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 DHX36Q9H2U1 1008 aaKnown RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 AFG3L2Q9Y4W6 797 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 PALLDQ8WX93 1383 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 IREB2P48200 963 aaKnown RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 ZMYM1Q5SVZ6 1142 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 TTLL6Q8N841 843 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 ZNF577Q9BSK1 485 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 BUB1BO60566 1050 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 ABCB4P21439 1286 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.43□□□□□ -0.11e-6■■■■□ 20.2
PTPRF-215ENST00000496447 TLR3O15455 904 aaKnown RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 PDE6CP51160 858 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 GRAPQ13588 217 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 GRAPLQ8TC17 118 aaPredicted RBP14.43□□□□□ -0.1
PTPRF-215ENST00000496447 RAB20Q9NX57 234 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 PRKAG2Q9UGJ0 569 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 NUB1Q9Y5A7 615 aa14.43□□□□□ -0.1
PTPRF-215ENST00000496447 ARAP3Q8WWN8 1544 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 HEG1Q9ULI3 1381 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 MAGI2Q86UL8 1455 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 USP17L3A6NCW0 530 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 USP17L4A6NCW7 530 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 SLC12A2P55011 1212 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 PPP2R5AQ15172 486 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 CFAP221Q4G0U5 840 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 USP17L1Q7RTZ2 530 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 C17orf53Q8N3J3 647 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 POMGNT1Q8WZA1 660 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 USP28Q96RU2 1077 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 MIS12Q9H081 205 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 TLR7Q9NYK1 1049 aaKnown RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 MMP10P09238 476 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 LONP1P36776 959 aaKnown RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 KIF11P52732 1056 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 HADHQ16836 314 aaKnown RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 RETREG2Q8NC44 543 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 JPH2Q9BR39 696 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 AMFRQ9UKV5 643 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 GOLGA6CA6NDK9 693 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 GOLGA6BA6NDN3 693 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 GTPBP6O43824 516 aaPredicted RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 GOLGA6DP0CG33 693 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 BMP3P12645 472 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 ERCC6LQ2NKX8 1250 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 FAM26FQ5R3K3 315 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 RSAD2Q8WXG1 361 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 PLEKHF1Q96S99 279 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 GOLGA6AQ9NYA3 693 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 XPOTO43592 962 aaKnown RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 PDIA3P30101 505 aaKnown RBP14.42□□□□□ -0.1
PTPRF-215ENST00000496447 PTGDRQ13258 359 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 SLC39A2Q9NP94 309 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 KIAA1024Q9UPX6 916 aa14.42□□□□□ -0.1
PTPRF-215ENST00000496447 M0R2C6 588 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 ADAM9Q13443 819 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 ODR4Q5SWX8 454 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 MIS18BP1Q6P0N0 1132 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 MKRN3Q13064 507 aaKnown RBP14.41□□□□□ -0.1
PTPRF-215ENST00000496447 PPM1KQ8N3J5 372 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 SLC7A3Q8WY07 619 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 METTL14Q9HCE5 456 aaKnown RBP14.41□□□□□ -0.1
PTPRF-215ENST00000496447 LRFN2Q9ULH4 789 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 SLC16A2P36021 539 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 PIK3CAP42336 1068 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 STAT2P52630 851 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 LONRF2Q1L5Z9 754 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 Q3C1V9 767 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 MASTLQ96GX5 879 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 KIAA1468Q9P260 1216 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 CCND2P30279 289 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 GCKP35557 465 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 LMBRD1Q9NUN5 540 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 PI4KBQ9UBF8 816 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 TSPOAP1O95153 1857 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 HNRNPDLO14979 420 aaKnown RBP14.41□□□□□ -0.1
PTPRF-215ENST00000496447 MIGA2Q7L4E1 593 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 PCDHA4Q9UN74 947 aa14.41□□□□□ -0.1
PTPRF-215ENST00000496447 SYMPKQ92797 1274 aaKnown RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 RPN1P04843 607 aaKnown RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 ADD2P35612 726 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 AOC3Q16853 763 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 PDZD4Q76G19 769 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 ZNF277Q9NRM2 450 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 FEZ2Q9UHY8 353 aaPredicted RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 CIB2O75838 187 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 CMA1P23946 247 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 ATP11AP98196 1134 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 ITKQ08881 620 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 CROCCP2Q86T23 111 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 SPATS2Q86XZ4 545 aaKnown RBP14.4□□□□□ -0.1
PTPRF-215ENST00000496447 SLC17A8Q8NDX2 589 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 TSC1Q92574 1164 aa14.4□□□□□ -0.1
PTPRF-215ENST00000496447 VPS37BQ9H9H4 285 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms