RNA–Protein interactions for RNA: ENST00000496393.2

NVL-223, Transcript of nuclear VCP-like, human

TSL 3

Gene NVL, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NVL-223	ENST00000496393	CHMP4C	Q96CF2	233 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	FAM122A	Q96E09	287 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	FGD4	Q96M96	766 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	9.42	□□□□□ -0.9
NVL-223	ENST00000496393	BOLA2	Q9H3K6	86 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	KANSL2	Q9H9L4	492 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	SPC25	Q9HBM1	224 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	RAVER2	Q9HCJ3	691 aa	Known RBP	9.42	□□□□□ -0.9
NVL-223	ENST00000496393	HOMER2	Q9NSB8	354 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	ATP8A2	Q9NTI2	1148 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	PAG1	Q9NWQ8	432 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	SLC4A4	Q9Y6R1	1079 aa		9.42	□□□□□ -0.9
NVL-223	ENST00000496393	DDX49	Q9Y6V7	483 aa	Known RBP	9.42	□□□□□ -0.9
NVL-223	ENST00000496393	GREB1L	Q9C091	1923 aa	Predicted RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	DNAJC25-GNG10	A0A024R161	153 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	C11orf97	A0A1B0GVM6	126 aa	Predicted RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	TLR3	O15455	904 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	IFIT2	P09913	472 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	CST5	P28325	142 aa	Predicted RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	CCL23	P55773	120 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	SKIV2L	Q15477	1246 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	PPP2R2D	Q66LE6	453 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	CXCL17	Q6UXB2	119 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	ARMCX2	Q7L311	632 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	ANKRD35	Q8N283	1001 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	MSL3	Q8N5Y2	521 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	PANK1	Q8TE04	598 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	HERVK_113	Q902F9	699 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	KIFC2	Q96AC6	838 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	DDRGK1	Q96HY6	314 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	UPF3A	Q9H1J1	476 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	HIPK3	Q9H422	1215 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	SLC28A3	Q9HAS3	691 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	IL23A	Q9NPF7	189 aa		9.41	□□□□□ -0.9
NVL-223	ENST00000496393	ISY1	Q9ULR0	285 aa	Known RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	CTDP1	Q9Y5B0	961 aa	Predicted RBP	9.41	□□□□□ -0.9
NVL-223	ENST00000496393	LRRC37A2	A6NM11	1700 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	ASTN1	O14525	1302 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	ZBBX	A8MT70	800 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393		F5H6K3	240 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	RFXAP	O00287	272 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	ARHGAP33	O14559	1287 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CTAGE5	O15320	804 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	PSEN2	P49810	448 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	KCNQ1	P51787	676 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	GJA9	P57773	515 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	KLRC3	Q07444	240 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	DMRTA1	Q5VZB9	504 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CTR9	Q6PD62	1173 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	ADGRD1	Q6QNK2	874 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	MAMDC4	Q6UXC1	1216 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CCDC144CP	Q8IYA2	1237 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	LRRC47	Q8N1G4	583 aa	Known RBP	9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CLASRP	Q8N2M8	674 aa	Known RBP	9.4	□□□□□ -0.9
NVL-223	ENST00000496393	TRPV6	Q9H1D0	765 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	MTIF3	Q9H2K0	278 aa	Known RBP	9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CERS4	Q9HA82	394 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	MYH7	P12883	1935 aa		9.4	□□□□□ -0.9
NVL-223	ENST00000496393	CHD7	Q9P2D1	2997 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	MYH4	Q9Y623	1939 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	ZBED9	Q6R2W3	1325 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	MINDY4B	A8MYZ0	360 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	ZBED4	O75132	1171 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	CD4	P01730	458 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	FGB	P02675	491 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	RASA1	P20936	1047 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	PSMC6	P62333	389 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	CNTN2	Q02246	1040 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	TLK2	Q86UE8	772 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	9.39	□□□□□ -0.91
NVL-223	ENST00000496393	KIF1BP	Q96EK5	621 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	SCLY	Q96I15	445 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	9.39	□□□□□ -0.91	1e-6	■■■□□ 15.4
NVL-223	ENST00000496393	KATNBL1	Q9H079	304 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	PUS7L	Q9H0K6	701 aa	Known RBP	9.39	□□□□□ -0.91
NVL-223	ENST00000496393	WNT8A	Q9H1J5	351 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	ABHD16B	Q9H3Z7	469 aa		9.39	□□□□□ -0.91
NVL-223	ENST00000496393	GRIN2D	O15399	1336 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	B4GALT4	O60513	344 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	PRDM1	O75626	825 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	TNFAIP2	Q03169	654 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	HSP90AB4P	Q58FF6	505 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	TMEM63B	Q5T3F8	832 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	KRT40	Q6A162	431 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	EEPD1	Q7L9B9	569 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	PRPF38A	Q8NAV1	312 aa	Known RBP	9.38	□□□□□ -0.91
NVL-223	ENST00000496393	PTCD2	Q8WV60	388 aa	Known RBP	9.38	□□□□□ -0.91
NVL-223	ENST00000496393	NOC4L	Q9BVI4	516 aa	Known RBP	9.38	□□□□□ -0.91
NVL-223	ENST00000496393	MKNK2	Q9HBH9	465 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	SLC38A10	Q9HBR0	1119 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	PLA2G2E	Q9NZK7	142 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	ARPP21	Q9UBL0	812 aa	Predicted RBP	9.38	□□□□□ -0.91
NVL-223	ENST00000496393	CLIP2	Q9UDT6	1046 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	SLC4A7	Q9Y6M7	1214 aa		9.38	□□□□□ -0.91
NVL-223	ENST00000496393	PRRC2B	Q5JSZ5	2229 aa	Known RBP	9.37	□□□□□ -0.91
NVL-223	ENST00000496393	REV3L	O60673	3130 aa		9.37	□□□□□ -0.91
NVL-223	ENST00000496393	SOWAHB	A6NEL2	793 aa		9.37	□□□□□ -0.91
NVL-223	ENST00000496393	ATP2A1	O14983	1001 aa		9.37	□□□□□ -0.91
NVL-223	ENST00000496393	DYNC1LI2	O43237	492 aa	Predicted RBP	9.37	□□□□□ -0.91
NVL-223	ENST00000496393	BMP1	P13497	986 aa		9.37	□□□□□ -0.91

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms