RNA–Protein interactions for RNA: ENST00000494728.5

VTI1A-208, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 463 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-208	ENST00000494728	ZKSCAN3	Q9BRR0	538 aa		13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	RANBP17	Q9H2T7	1088 aa	Known RBP	13.75	□□□□□ -0.21
VTI1A-208	ENST00000494728	POTEB2	H3BUK9	544 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	NFIB	O00712	420 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	PQBP1	O60828	265 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	FDX1	P10109	184 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	PDHB	P11177	359 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	TOP1	P11387	765 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	GSPT1	P15170	499 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	ACLY	P53396	1101 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	IRX6	P78412	446 aa	Predicted RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	SYDE2	Q5VT97	1194 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	BTNL9	Q6UXG8	535 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	TICAM2	Q86XR7	235 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	UPF3A	Q9H1J1	476 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	CPVL	Q9H3G5	476 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	ABHD16B	Q9H3Z7	469 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	GPCPD1	Q9NPB8	672 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	TCP11L1	Q9NUJ3	509 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	CYP39A1	Q9NYL5	469 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	FAM184B	Q9ULE4	1060 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	CCPG1	Q9ULG6	757 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	SUPT16H	Q9Y5B9	1047 aa	Known RBP	13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	TRANK1	O15050	2925 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	KIAA1217	Q5T5P2	1943 aa		13.74	□□□□□ -0.21
VTI1A-208	ENST00000494728	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	DUSP11	O75319	330 aa	Known RBP	13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	ICAM1	P05362	532 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	SNHG28	P0DPA3	235 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	CST5	P28325	142 aa	Predicted RBP	13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	EPHB4	P54760	987 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	SHH	Q15465	462 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	KCNA10	Q16322	511 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	PPP4R3B	Q5MIZ7	849 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	DEFB123	Q8N688	67 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	LBHD1	Q9BQE6	289 aa	Predicted RBP	13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	PDGFC	Q9NRA1	345 aa		13.73	□□□□□ -0.21
VTI1A-208	ENST00000494728	CLTB	P09497	229 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	C6orf222	P0C671	652 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	GJA9	P57773	515 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	BEX3	Q00994	111 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	ZNF543	Q08ER8	600 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	FAAP100	Q0VG06	881 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	TKFC	Q3LXA3	575 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	NSMF	Q6X4W1	530 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	SLC30A10	Q6XR72	485 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	MFSD6	Q6ZSS7	791 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	EEPD1	Q7L9B9	569 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	FBXO16	Q8IX29	292 aa	Predicted RBP	13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	TSEN34	Q9BSV6	310 aa	Known RBP	13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	STARD7	Q9NQZ5	370 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	DIAPH3	Q9NSV4	1193 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	PRKAG2	Q9UGJ0	569 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	SCN10A	Q9Y5Y9	1956 aa		13.72	□□□□□ -0.21
VTI1A-208	ENST00000494728	KIAA0355	O15063	1070 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	ASGR1	P07306	291 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	GOLGA8H	P0CJ92	632 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	GPR153	Q6NV75	609 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	TAPT1	Q6NXT6	567 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	ANKRD33	Q7Z3H0	272 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	CLEC4D	Q8WXI8	215 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	GNE	Q9Y223	722 aa	Known RBP	13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	MUC3A	Q02505	3323 aa		13.71	□□□□□ -0.21
VTI1A-208	ENST00000494728	SCN5A	Q14524	2016 aa		13.71	□□□□□ -0.22
VTI1A-208	ENST00000494728	TANC1	Q9C0D5	1861 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	MOXD2P	A6NHM9	499 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728		B4E1Z4	1266 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	KDM4A	O75164	1064 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	SMPD1	P17405	629 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	BAAT	Q14032	418 aa	Predicted RBP	13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	MORC4	Q8TE76	937 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	GUCD1	Q96NT3	240 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	MTMR10	Q9NXD2	777 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	TBX21	Q9UL17	535 aa		13.7	□□□□□ -0.22
VTI1A-208	ENST00000494728	ZNF213	O14771	459 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	PC	P11498	1178 aa	Known RBP	13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	CDK7	P50613	346 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	ALDH5A1	P51649	535 aa	Predicted RBP	13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	NKX3-2	P78367	333 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	TNFAIP2	Q03169	654 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	TTC22	Q5TAA0	569 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	TLK2	Q86UE8	772 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	ENAH	Q8N8S7	591 aa	Predicted RBP	13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	ESR2	Q92731	530 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	DSCC1	Q9BVC3	393 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	RNF41	Q9H4P4	317 aa	Predicted RBP	13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	TAF6L	Q9Y6J9	622 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	MYO9B	Q13459	2157 aa		13.69	□□□□□ -0.22
VTI1A-208	ENST00000494728	GRIN2D	O15399	1336 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	ASB14	A6NK59	587 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	MFAP1	P55081	439 aa	Known RBP	13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	GNAS	Q5JWF2	1037 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	CXCL17	Q6UXB2	119 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	PNMA1	Q8ND90	353 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	NUP133	Q8WUM0	1156 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	FAM161B	Q96MY7	647 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	TTC14	Q96N46	770 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	TOX2	Q96NM4	488 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	UBA5	Q9GZZ9	404 aa		13.68	□□□□□ -0.22
VTI1A-208	ENST00000494728	TMEM39A	Q9NV64	488 aa		13.68	□□□□□ -0.22

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