RNA–Protein interactions for RNA: ENST00000493660.5

SMARCE1-211, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 3

Gene SMARCE1, Length 2,284 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-211ENST00000493660 NBPF12Q5TAG4 269 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 MCTP1Q6DN14 999 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 MIGA2Q7L4E1 593 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 USP48Q86UV5 1035 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 PNMA8AQ86V59 439 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 STAG2Q8N3U4 1231 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 CCDC112Q8NEF3 446 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 TTC12Q9H892 705 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 GOPCQ9HD26 462 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 V9GY48 417 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 PARP14Q460N5 1801 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 DTNBO60941 627 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 MMP1P03956 469 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 KRT85P78386 507 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 ATP2B2Q01814 1243 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 KIF23Q02241 960 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 FOXD4L5Q5VV16 416 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 SLFN13Q68D06 897 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 USP17L2Q6R6M4 530 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 CLEC10AQ8IUN9 316 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 SULF1Q8IWU6 871 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 C17orf53Q8N3J3 647 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 NEK11Q8NG66 645 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 FOXD4L4Q8WXT5 416 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 ERCC4Q92889 916 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 SYAP1Q96A49 352 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 RRP36Q96EU6 259 aaKnown RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 TAF1DQ9H5J8 278 aaPredicted RBP8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 PSD3Q9NYI0 1048 aa8.19□□□□□ -1.1
SMARCE1-211ENST00000493660 SYCE3A1L190 88 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 F5H6K3 240 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 PLA2G6O60733 806 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 KLRC3Q07444 240 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 SHROOM1Q2M3G4 852 aaPredicted RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 GALNT17Q6IS24 598 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 SCYL3Q8IZE3 742 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CMTR1Q8N1G2 835 aaKnown RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CCDC148Q8NFR7 591 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CCDC12Q8WUD4 166 aaPredicted RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 ZNF396Q96N95 335 aaPredicted RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 AIFM3Q96NN9 605 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 PHF20Q9BVI0 1012 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 FOXP1Q9H334 677 aaPredicted RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.18□□□□□ -1.12e-6■■■■■ 149.1
SMARCE1-211ENST00000493660 PTPRFP10586 1907 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CYTH3O43739 400 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 NDUFB10O96000 172 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 TPM1P09493 284 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CALML3P27482 149 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 SLC1A4P43007 532 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 FOSBP53539 338 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 PPP1R18Q6NYC8 613 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 BTNL9Q6UXG8 535 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 FERMT3Q86UX7 667 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CCDC82Q8N4S0 544 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 GPT2Q8TD30 523 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 MTMR8Q96EF0 704 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 WDR18Q9BV38 432 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 SCAND2PQ9GZW5 306 aaPredicted RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 VCPKMTQ9H867 229 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 AS3MTQ9HBK9 375 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 SEC63Q9UGP8 760 aaKnown RBP8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 CFAP45Q9UL16 551 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 ELP1O95163 1332 aa8.18□□□□□ -1.1
SMARCE1-211ENST00000493660 BAZ2BQ9UIF8 2168 aaKnown RBP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 LOC285556D6RIA3 1793 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 A0A1W2PRG0 241 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 PPFIA3O75145 1194 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 BMP3P12645 472 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 USP8P40818 1118 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 GUCY1B3Q02153 619 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 SLC35G1Q2M3R5 365 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 LHX8Q68G74 356 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 TSHZ1Q6ZSZ6 1077 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 DAGLBQ8NCG7 672 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 LPAR1Q92633 364 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 KLRG1Q96E93 195 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 ERO1AQ96HE7 468 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 KIAA1683Q9H0B3 1180 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 ST7Q9NRC1 585 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 BARHL2Q9NY43 387 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 FRMPD2Q68DX3 1309 aaPredicted RBP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 RBBP6Q7Z6E9 1792 aaKnown RBP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 ESYT2A0FGR8 921 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 POTECB2RU33 542 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 GOLGA8HP0CJ92 632 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 KCNA4P22459 653 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 NF2P35240 595 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 KRT2P35908 639 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 DNM1Q05193 864 aaKnown RBP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 GNL2Q13823 731 aaKnown RBP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 E2F4Q16254 413 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 OTUD7BQ6GQQ9 843 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 KRT26Q7Z3Y9 468 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 DDX55Q8NHQ9 600 aaKnown RBP eCLIP8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 WRNIP1Q96S55 665 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 GPCPD1Q9NPB8 672 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 PICK1Q9NRD5 415 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 ETAA1Q9NY74 926 aa8.17□□□□□ -1.1
SMARCE1-211ENST00000493660 TMEM63CQ9P1W3 806 aa8.17□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 102.6 ms