RNA–Protein interactions for RNA: ENST00000493553.1

PRPF3-206, Transcript of pre-mRNA processing factor 3, humanhuman

TSL 2

Gene PRPF3, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF3-206ENST00000493553 KRT40Q6A162 431 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 TMEM214Q6NUQ4 689 aaKnown RBP11.54□□□□□ -0.56
PRPF3-206ENST00000493553 RBM43Q6ZSC3 357 aaKnown RBP11.54□□□□□ -0.56
PRPF3-206ENST00000493553 TXNRD3Q86VQ6 643 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 FAM43AQ8N2R8 423 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 ENAHQ8N8S7 591 aaPredicted RBP11.54□□□□□ -0.56
PRPF3-206ENST00000493553 ZNF384Q8TF68 577 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 ZNF837Q96EG3 531 aaPredicted RBP11.54□□□□□ -0.56
PRPF3-206ENST00000493553 CNTNAP3BQ96NU0 1288 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 SLC26A6Q9BXS9 759 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 CNTNAP3Q9BZ76 1288 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 MKNK2Q9HBH9 465 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 NOD1Q9Y239 953 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 PCDHGA11Q9Y5H2 935 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 RGPD3A6NKT7 1758 aaPredicted RBP11.54□□□□□ -0.56
PRPF3-206ENST00000493553 RGPD4Q7Z3J3 1758 aa11.54□□□□□ -0.56
PRPF3-206ENST00000493553 A6NJR5 290 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 TSPY2A6NKD2 308 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 USP17L5A8MUK1 530 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 SPTLC2O15270 562 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 PRPF3O43395 683 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 PPP6R2O75170 966 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 POLR3DP05423 398 aaPredicted RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 MMP10P09238 476 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 HDLBPQ00341 1268 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 SLC39A14Q15043 492 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 ZRSR1Q15695 479 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 RNFT1Q5M7Z0 435 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 MFSD14BQ5SR56 506 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 ANO1Q5XXA6 986 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 SASS6Q6UVJ0 657 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 PODNQ7Z5L7 613 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 TEX11Q8IYF3 940 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 ZNF444Q8N0Y2 327 aaPredicted RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 LINC00301Q8NCQ3 95 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 MRPS27Q92552 414 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 CHAMP1Q96JM3 812 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 USP28Q96RU2 1077 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 RBSNQ9H1K0 784 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 KAT14Q9H8E8 782 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 DACT1Q9NYF0 836 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 MKRN1Q9UHC7 482 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 HOOK1Q9UJC3 728 aaKnown RBP11.53□□□□□ -0.56
PRPF3-206ENST00000493553 GAKO14976 1311 aa11.53□□□□□ -0.56
PRPF3-206ENST00000493553 TNRC6CQ9HCJ0 1690 aaKnown RBP11.52□□□□□ -0.56
PRPF3-206ENST00000493553 BRWD3Q6RI45 1802 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 F11P03951 625 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 MMP1P03956 469 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 CALML3P27482 149 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 CDC27P30260 824 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 SF3B2Q13435 895 aaKnown RBP11.52□□□□□ -0.57
PRPF3-206ENST00000493553 NCOA4Q13772 614 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 ZNF827Q17R98 1081 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 HHIPL2Q6UWX4 724 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 RIPOR1Q6ZS17 1223 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 NOSTRINQ8IVI9 506 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 CCAR1Q8IX12 1150 aaKnown RBP11.52□□□□□ -0.57
PRPF3-206ENST00000493553 NUP133Q8WUM0 1156 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 GAS2L1Q99501 681 aaPredicted RBP11.52□□□□□ -0.57
PRPF3-206ENST00000493553 NAT10Q9H0A0 1025 aaKnown RBP11.52□□□□□ -0.57
PRPF3-206ENST00000493553 POLLQ9UGP5 575 aa11.52□□□□□ -0.57
PRPF3-206ENST00000493553 NOL7Q9UMY1 257 aaKnown RBP11.52□□□□□ -0.57
PRPF3-206ENST00000493553 CCDC88AQ3V6T2 1871 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 WTIPA6NIX2 430 aaPredicted RBP11.51□□□□□ -0.57
PRPF3-206ENST00000493553 TPM3P06753 285 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 CMA1P23946 247 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 SMARCA1P28370 1054 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 BTDP43251 543 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 GUCY1B3Q02153 619 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 TROAPQ12815 778 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 DBN1Q16643 649 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 C4orf17Q53FE4 359 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 GALNT17Q6IS24 598 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 FAM173BQ6P4H8 233 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 FAM200AQ8TCP9 573 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 RHBDD1Q8TEB9 315 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 PDLIM2Q96JY6 352 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 TIGD1Q96MW7 591 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 UCN2Q96RP3 112 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 RTFDC1Q9BY42 306 aaPredicted RBP11.51□□□□□ -0.57
PRPF3-206ENST00000493553 SH3GLB2Q9NR46 395 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 COL4A1P02462 1669 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 MYO3BQ8WXR4 1341 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 KIAA1551Q9HCM1 1747 aa11.51□□□□□ -0.57
PRPF3-206ENST00000493553 MYH13Q9UKX3 1938 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 NRXN2Q9P2S2 1712 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 A0A1B0GTH6 734 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 TMEM229AB2RXF0 380 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 CUTAO60888 179 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 TSPY3P0CV98 308 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 TSPY8P0CW00 308 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 TRAPPC10P48553 1259 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 GTF2IP78347 998 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 SLC15A2Q16348 729 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 TMTC3Q6ZXV5 915 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 C2CD5Q86YS7 1000 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 ELOA2Q8IYF1 753 aaPredicted RBP11.5□□□□□ -0.57
PRPF3-206ENST00000493553 FSIP1Q8NA03 581 aa11.5□□□□□ -0.57
PRPF3-206ENST00000493553 SH3RF3Q8TEJ3 882 aaPredicted RBP11.5□□□□□ -0.57
PRPF3-206ENST00000493553 PHKBQ93100 1093 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms