RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 ANP32EQ9BTT0 268 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 PSTPIP2Q9H939 334 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 EHMT1Q9H9B1 1298 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 VAT1LQ9HCJ6 419 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 FBXO40Q9UH90 709 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 BAZ2BQ9UIF8 2168 aaKnown RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 KCNJ14Q9UNX9 436 aa11.05□□□□□ -0.64
USP54-214ENST00000492357 CTDP1Q9Y5B0 961 aaPredicted RBP11.05□□□□□ -0.64
USP54-214ENST00000492357 TESPA1A2RU30 521 aaPredicted RBP11.04□□□□□ -0.64
USP54-214ENST00000492357 UBE2Q2LH0YL09 131 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 TRAF5O00463 557 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 PPP6R2O75170 966 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 GCFC2P16383 781 aaKnown RBP11.04□□□□□ -0.64
USP54-214ENST00000492357 OSBPP22059 807 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 GUCY1B3Q02153 619 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 SLC39A14Q15043 492 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 NFKBIBQ15653 356 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 TYW1BQ6NUM6 668 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 ANKRD23Q86SG2 305 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 CCDC84Q86UT8 332 aaPredicted RBP11.04□□□□□ -0.64
USP54-214ENST00000492357 CCDC102AQ96A19 550 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 CLMNQ96JQ2 1002 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 SPATA32Q96LK8 384 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 TEX13BQ9BXU2 312 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 SSUH2Q9Y2M2 353 aa11.04□□□□□ -0.64
USP54-214ENST00000492357 LOC102724159A0A0B4J2E5 919 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 hCG_1642624A0A1W2PR95 340 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 MANSC4A6NHS7 340 aaPredicted RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 KIF28PB7ZC32 967 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 PPP1R11O60927 126 aaPredicted RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 PPFIA3O75145 1194 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 GCLCP48506 637 aaPredicted RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 USP11P51784 963 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 UBE2HP62256 183 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 IRX3P78415 501 aaPredicted RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 DNM1Q05193 864 aaKnown RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 PWP2Q15269 919 aaKnown RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 SPRYD7Q5W111 196 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 CST9Q5W186 159 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 ANO1Q5XXA6 986 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 ARL6IP4Q66PJ3 421 aaKnown RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 OTUD7BQ6GQQ9 843 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 CHST13Q8NET6 341 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 REPS2Q8NFH8 660 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 SHISA4Q96DD7 197 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 CPVLQ9H3G5 476 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 FRMD4AQ9P2Q2 1039 aaPredicted RBP11.03□□□□□ -0.64
USP54-214ENST00000492357 PCDHA6Q9UN73 950 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 PCDHA8Q9Y5H6 950 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 TLL2Q9Y6L7 1015 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 ZNF536O15090 1300 aa11.03□□□□□ -0.64
USP54-214ENST00000492357 TCHHQ07283 1943 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 A0A1W2PQ27 194 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 A0A1W2PQ64 194 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 A0A1W2PQD8 194 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 SPDYE16A6NNV3 312 aaPredicted RBP11.02□□□□□ -0.65
USP54-214ENST00000492357 SLC25A27O95847 323 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 PRPHP41219 470 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 HUNKP57058 714 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 NR5A1Q13285 461 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 MOGSQ13724 837 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 PPP4R3AQ6IN85 833 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 RGMBQ6NW40 437 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 XRRA1Q6P2D8 792 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 NEK8Q86SG6 692 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 SAPCD2Q86UD0 394 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 LINC00301Q8NCQ3 95 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 SHCBP1Q8NEM2 672 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 LEO1Q8WVC0 666 aaPredicted RBP11.02□□□□□ -0.65
USP54-214ENST00000492357 FERMT2Q96AC1 680 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 COA7Q96BR5 231 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 MS4A4AQ96JQ5 239 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 USP28Q96RU2 1077 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 ZNF408Q9H9D4 720 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 GJB4Q9NTQ9 266 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 FBXO28Q9NVF7 368 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 ZNF214Q9UL59 606 aaPredicted RBP11.02□□□□□ -0.65
USP54-214ENST00000492357 CCPG1Q9ULG6 757 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 FZD1Q9UP38 647 aa11.02□□□□□ -0.65
USP54-214ENST00000492357 SRCAPQ6ZRS2 3230 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 TMEM88BA6NKF7 163 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 SPDYE3A6NKU9 549 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 GCOM1H8Y6P7 765 aaPredicted RBP11.01□□□□□ -0.65
USP54-214ENST00000492357 MEIS2O14770 477 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 SPTLC2O15270 562 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 CYP3A4P08684 503 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 POLR2MP0CAP2 368 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 HSD17B4P51659 736 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 STK38Q15208 465 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 KLHL40Q2TBA0 621 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 ADALQ6DHV7 355 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 DLK2Q6UY11 383 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 GADL1Q6ZQY3 521 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 MOB2Q70IA6 237 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 RIOX2Q8IUF8 465 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 ZNF579Q8NAF0 562 aaKnown RBP11.01□□□□□ -0.65
USP54-214ENST00000492357 OXER1Q8TDS5 423 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 ZNF526Q8TF50 670 aaPredicted RBP11.01□□□□□ -0.65
USP54-214ENST00000492357 ATG4CQ96DT6 458 aa11.01□□□□□ -0.65
USP54-214ENST00000492357 LMBRD1Q9NUN5 540 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms