RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 PRRT2Q7Z6L0 340 aaPredicted RBP11.71□□□□□ -0.53
HDAC3-210ENST00000490808 STAG2Q8N3U4 1231 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 ZNF579Q8NAF0 562 aaKnown RBP11.71□□□□□ -0.53
HDAC3-210ENST00000490808 FERMT2Q96AC1 680 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 TIGD1Q96MW7 591 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 RIOX1Q9H6W3 641 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 MTMR7Q9Y216 660 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 ZHX2Q9Y6X8 837 aa11.71□□□□□ -0.53
HDAC3-210ENST00000490808 LOC285556D6RIA3 1793 aa11.71□□□□□ -0.54
HDAC3-210ENST00000490808 ESYT2A0FGR8 921 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 NR1I2O75469 434 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 GH2P01242 217 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 SNHG28P0DPA3 235 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 XRCC6P12956 609 aaKnown RBP eCLIP11.7□□□□□ -0.54
HDAC3-210ENST00000490808 BACE1P56817 501 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 ICA1Q05084 483 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 ZNF543Q08ER8 600 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 CCDC96Q2M329 555 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 USP17L2Q6R6M4 530 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 KRT25Q7Z3Z0 450 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 ANKRD23Q86SG2 305 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 GAS2L3Q86XJ1 694 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 GTF3C2Q8WUA4 911 aaPredicted RBP11.7□□□□□ -0.54
HDAC3-210ENST00000490808 LPAR1Q92633 364 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 MS4A4AQ96JQ5 239 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 GOPCQ9HD26 462 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 PNMA3Q9UL41 463 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 FZD1Q9UP38 647 aa11.7□□□□□ -0.54
HDAC3-210ENST00000490808 CCL15-CCL14A0A0B4J2E2 113 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 PNMA6FA0A0J9YX94 578 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 FAM196BA6NMK8 535 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 LAD1O00515 517 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 EEF2P13639 858 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 SLC1A4P43007 532 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 CCDC173Q0VFZ6 552 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 NR5A1Q13285 461 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 ORC2Q13416 577 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 PTPAQ15257 358 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 CCL15Q16663 113 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 TTC38Q5R3I4 469 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 RBM43Q6ZSC3 357 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 CTU1Q7Z7A3 348 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 TEX2Q8IWB9 1127 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 ELOA2Q8IYF1 753 aaPredicted RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 GMCL1P1Q8NEA9 526 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 C12orf42Q96LP6 360 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 NAP1L4Q99733 375 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 NAT10Q9H0A0 1025 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 KIAA1683Q9H0B3 1180 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 ZMYND12Q9H0C1 365 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 RNF186Q9NXI6 227 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 TMOD4Q9NZQ9 345 aa11.69□□□□□ -0.54
HDAC3-210ENST00000490808 SRPRBQ9Y5M8 271 aaKnown RBP11.69□□□□□ -0.54
HDAC3-210ENST00000490808 hCG_1642624A0A1W2PR95 340 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 SMCO2A6NFE2 343 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 STXBP3O00186 592 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 ZNF202O95125 648 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 GDF11O95390 407 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 GOLGA8HP0CJ92 632 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 PTPREP23469 700 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 MARCKSP29966 332 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 GJA5P36382 358 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 SYKP43405 635 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 SPP2Q13103 211 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 NONOQ15233 471 aaKnown RBP eCLIP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 CAMK4Q16566 473 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 ARL6IP4Q66PJ3 421 aaKnown RBP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 SLFN13Q68D06 897 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 IFNL1Q8IU54 200 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 LRRC47Q8N1G4 583 aaKnown RBP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 ENGASEQ8NFI3 743 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 PIBF1Q8WXW3 757 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 TRIM44Q96DX7 344 aaPredicted RBP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 GMCL1Q96IK5 515 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 FTOQ9C0B1 505 aaKnown RBP eCLIP11.68□□□□□ -0.54
HDAC3-210ENST00000490808 VAT1LQ9HCJ6 419 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 USP25Q9UHP3 1055 aa11.68□□□□□ -0.54
HDAC3-210ENST00000490808 FAM237AA0A1B0GTK4 181 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 A0A1B0GVL5 298 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 ZBTB5O15062 677 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 RAD21O60216 631 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 ATP2B1P20020 1258 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 HOXA7P31268 230 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-210ENST00000490808 TXLNAP40222 546 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 MRPL12P52815 198 aaKnown RBP11.67□□□□□ -0.54
HDAC3-210ENST00000490808 SEPT2Q15019 361 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 ARHGEF6Q15052 776 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 STX1AQ16623 288 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 AXDND1Q5T1B0 1012 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-210ENST00000490808 RESP18Q5W5W9 173 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 WWC2Q6AWC2 1192 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 PIK3AP1Q6ZUJ8 805 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 HOMER1Q86YM7 354 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 FMR1NBQ8N0W7 255 aaPredicted RBP11.67□□□□□ -0.54
HDAC3-210ENST00000490808 OXER1Q8TDS5 423 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 PARK7Q99497 189 aaKnown RBP11.67□□□□□ -0.54
HDAC3-210ENST00000490808 FEZ1Q99689 392 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 RBSNQ9H1K0 784 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 ZFYVE28Q9HCC9 887 aa11.67□□□□□ -0.54
HDAC3-210ENST00000490808 GPCPD1Q9NPB8 672 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms