RNA–Protein interactions for RNA: ENST00000490444.2

PUM3-204, Transcript of pumilio RNA binding family member 3, human

TSL 5

Gene PUM3, Length 340 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PUM3-204	ENST00000490444	GBP1	P32455	592 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	ZNF165	P49910	485 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	ATXN1	P54253	815 aa	Known RBP	3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	INHBE	P58166	350 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	KLF10	Q13118	480 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	COL9A2	Q14055	689 aa	Predicted RBP	3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	SLC14A2	Q15849	920 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	PHACTR4	Q8IZ21	702 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	RBBP8NL	Q8NC74	664 aa	Predicted RBP	3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	SEC16B	Q96JE7	1060 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	SPATA32	Q96LK8	384 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	C8orf37	Q96NL8	207 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	KLHL3	Q9UH77	587 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	PPT2	Q9UMR5	302 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	EFR3B	Q9Y2G0	817 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	INPP5F	Q9Y2H2	1132 aa		3.9	□□□□□ -1.79
PUM3-204	ENST00000490444	SSU72P8	A0A1W2PR75	194 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	SHISA3	A0PJX4	238 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	PLAT	P00750	562 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	HMGB1	P09429	215 aa	Known RBP	3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	FGR	P09769	529 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	MSL3P1	P0C860	447 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	PFKL	P17858	780 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	SDHB	P21912	280 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	RPL10	P27635	214 aa	Known RBP	3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	ZC3H6	P61129	1189 aa	Known RBP	3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	TGFB2	P61812	414 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	CDCP2	Q5VXM1	449 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	OVOS1	Q6IE37	1185 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	GK5	Q6ZS86	529 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	SAPCD2	Q86UD0	394 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	ENOX1	Q8TC92	643 aa	Known RBP	3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	FNIP1	Q8TF40	1166 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	KISS1R	Q969F8	398 aa	Predicted RBP	3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	ATG4C	Q96DT6	458 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	SHD	Q96IW2	340 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	CNNM2	Q9H8M5	875 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	CAPN10	Q9HC96	672 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	GMIP	Q9P107	970 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	SUSD2	Q9UGT4	822 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444	ZMYM5	Q9UJ78	669 aa		3.89	□□□□□ -1.79
PUM3-204	ENST00000490444		A0A1B0GTL3	188 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	USP2	O75604	605 aa	Predicted RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	ACR	P10323	421 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	CDK11B	P21127	795 aa	Known RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	MCM4	P33991	863 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	LIMS1	P48059	325 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	GIPR	P48546	466 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	NASP	P49321	788 aa	Predicted RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	NCKAP1L	P55160	1127 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	GJA9	P57773	515 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	NMI	Q13287	307 aa	Predicted RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	MLEC	Q14165	292 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	CBX2	Q14781	532 aa	Predicted RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	CDSN	Q15517	529 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	NAALADL2	Q58DX5	795 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	RNF111	Q6ZNA4	994 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	WAPL	Q7Z5K2	1190 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	MCF2L2	Q86YR7	1114 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	ADGRG2	Q8IZP9	1017 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	MAP6	Q96JE9	813 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	KIF2C	Q99661	725 aa		3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	CDK11A	Q9UQ88	783 aa	Predicted RBP	3.88	□□□□□ -1.79
PUM3-204	ENST00000490444	TNFRSF10C	O14798	259 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	UBOX5	O94941	541 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	NME1	P15531	152 aa	Known RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	PCBP3	P57721	371 aa	Known RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	RNF4	P78317	190 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	ARSH	Q5FYA8	562 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	CCDC81	Q6ZN84	652 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	CEP128	Q6ZU80	1094 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	TAB3	Q8N5C8	712 aa	Predicted RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	USHBP1	Q8N6Y0	703 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	FAM169B	Q8N8A8	192 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	DAGLB	Q8NCG7	672 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	SYTL5	Q8TDW5	730 aa	Predicted RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	SRRT	Q9BXP5	876 aa	Known RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	ING1	Q9UK53	422 aa	Predicted RBP	3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	HS3ST3A1	Q9Y663	406 aa		3.87	□□□□□ -1.79
PUM3-204	ENST00000490444	RGS13	O14921	159 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	PLA2G1B	P04054	148 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	IMPDH2	P12268	514 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	POLR2B	P30876	1174 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	ARL4A	P40617	200 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	HTRA3	P83110	453 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	LAPTM5	Q13571	262 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	RAB3GAP1	Q15042	981 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	TARBP2	Q15633	366 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	LRRFIP1	Q32MZ4	808 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	LRCH2	Q5VUJ6	765 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	INTS3	Q68E01	1043 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	RUFY4	Q6ZNE9	571 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	NLRC3	Q7RTR2	1065 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	ZNF655	Q8N720	491 aa	Predicted RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	CDK5RAP1	Q96SZ6	601 aa	Known RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	SLC9A7	Q96T83	725 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	SSBP3	Q9BWW4	388 aa	Predicted RBP	3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	HDAC8	Q9BY41	377 aa		3.86	□□□□□ -1.79
PUM3-204	ENST00000490444	FOXP3	Q9BZS1	431 aa		3.86	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms