RNA–Protein interactions for RNA: ENST00000490348.1

SRGAP3-208, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 2

Gene SRGAP3, Length 1,554 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-208ENST00000490348 ACAD9Q9H845 621 aa16.72■□□□□ 0.27
SRGAP3-208ENST00000490348 A1CFQ9NQ94 594 aaKnown RBP16.72■□□□□ 0.27
SRGAP3-208ENST00000490348 DNAJC25-GNG10A0A024R161 153 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 ZBTB5O15062 677 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 PDIA3P30101 505 aaKnown RBP16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 RCAN1P53805 252 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 TRIM32Q13049 653 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 KCTD2Q14681 263 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 RTN1Q16799 776 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 TKFCQ3LXA3 575 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 SYNE3Q6ZMZ3 975 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 HOMER1Q86YM7 354 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 SLAIN1Q8ND83 568 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 PIBF1Q8WXW3 757 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 FBXO40Q9UH90 709 aa16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 ZNFX1Q9P2E3 1918 aaKnown RBP16.71■□□□□ 0.27
SRGAP3-208ENST00000490348 DNAH12Q6ZR08 3092 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 GOLGA8AA7E2F4 631 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 SMARCA1P28370 1054 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 ADD1P35611 737 aaKnown RBP16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 ZNF792Q3KQV3 632 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 CCDC82Q8N4S0 544 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 ZNF333Q96JL9 665 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 FGD4Q96M96 766 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 LZTS2Q9BRK4 669 aa16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 ALDH8A1Q9H2A2 487 aaPredicted RBP16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 NAP1L2Q9ULW6 460 aaPredicted RBP16.7■□□□□ 0.26
SRGAP3-208ENST00000490348 hCG_1642624A0A1W2PR95 340 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 OPLAHO14841 1288 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 GNAQP50148 359 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 METAP2P50579 478 aaKnown RBP eCLIP16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 AK2P54819 239 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 DPP9Q86TI2 863 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 FBXO11Q86XK2 927 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 ANKRD35Q8N283 1001 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 CYP39A1Q9NYL5 469 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 KIAA0100Q14667 2235 aaKnown RBP16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 MYH6P13533 1939 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 ASTN1O14525 1302 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 CNTNAP5Q8WYK1 1306 aa16.69■□□□□ 0.26
SRGAP3-208ENST00000490348 PNMA6FA0A0J9YX94 578 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 INHAP05111 366 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 MAML3Q96JK9 1138 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 PURBQ96QR8 312 aaKnown RBP16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 AMNQ9BXJ7 453 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 NCOA5Q9HCD5 579 aaKnown RBP16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 RBM28Q9NW13 759 aaKnown RBP16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 TPCN1Q9ULQ1 816 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 NEK4P51957 841 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 CNTN2Q02246 1040 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 MTFR1Q15390 333 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 TBC1D5Q92609 795 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 DDX11Q96FC9 970 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 TBC1D32Q96NH3 1257 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 PNMA2Q9UL42 364 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 LCTP09848 1927 aa16.68■□□□□ 0.26
SRGAP3-208ENST00000490348 ABCB11O95342 1321 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 MYCP01106 439 aaPredicted RBP16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 HMGCRP04035 888 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 CCT2P78371 535 aaKnown RBP16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 NTRK3Q16288 839 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 MAP3K21Q5TCX8 1036 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 OLFML2BQ68BL8 750 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 NSMFQ6X4W1 530 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 SLC30A10Q6XR72 485 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 FAM133AQ8N9E0 248 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 RRP36Q96EU6 259 aaKnown RBP16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 ZNF274Q96GC6 653 aaPredicted RBP16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 PCDHA1Q9Y5I3 950 aa16.67■□□□□ 0.26
SRGAP3-208ENST00000490348 PLXNA1Q9UIW2 1896 aa16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 PFASO15067 1338 aa16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 CYP2C19P33261 490 aa16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 BAATQ14032 418 aaPredicted RBP16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 DIS3Q9Y2L1 958 aaKnown RBP16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 DDX49Q9Y6V7 483 aaKnown RBP16.66■□□□□ 0.26
SRGAP3-208ENST00000490348 SOWAHBA6NEL2 793 aa16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 LARGE1O95461 756 aa16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 RPS6P62753 249 aaKnown RBP16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 CACNB2Q08289 660 aaPredicted RBP16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 STK3Q13188 491 aa16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 PPP2R5BQ15173 497 aa16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 TRMT44Q8IYL2 757 aaKnown RBP16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 BIN2Q9UBW5 565 aaPredicted RBP16.65■□□□□ 0.26
SRGAP3-208ENST00000490348 POTEB2H3BUK9 544 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 PPFIA3O75145 1194 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 PRKAR2AP13861 404 aaKnown RBP16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 RNF207Q6ZRF8 634 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 NOL8Q76FK4 1167 aaKnown RBP16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 RGS22Q8NE09 1264 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 TRPV1Q8NER1 839 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 UNC93B1Q9H1C4 597 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 UPF2Q9HAU5 1272 aaKnown RBP16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 SLC5A4Q9NY91 659 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 COL20A1Q9P218 1284 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 MRPL11Q9Y3B7 192 aaKnown RBP16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 V9GY48 417 aaPredicted RBP16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 CCDC196A0A1B0GTZ2 297 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 PTPDC1A2A3K4 754 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 CCL5P13501 91 aa16.64■□□□□ 0.25
SRGAP3-208ENST00000490348 GHRHRQ02643 423 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms