RNA–Protein interactions for RNA: ENST00000486618.1

HDAC3-209, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 711 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-209ENST00000486618 TREML2Q5T2D2 321 aa8.24□□□□□ -1.09
HDAC3-209ENST00000486618 DZIP1Q86YF9 867 aaKnown RBP8.24□□□□□ -1.09
HDAC3-209ENST00000486618 ZNF280CQ8ND82 737 aa8.24□□□□□ -1.09
HDAC3-209ENST00000486618 LBHD1Q9BQE6 289 aaPredicted RBP8.24□□□□□ -1.09
HDAC3-209ENST00000486618 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.24□□□□□ -1.09
HDAC3-209ENST00000486618 AS3MTQ9HBK9 375 aa8.24□□□□□ -1.09
HDAC3-209ENST00000486618 UTP3Q9NQZ2 479 aaKnown RBP eCLIP8.24□□□□□ -1.09
HDAC3-209ENST00000486618 HRH3Q9Y5N1 445 aa8.24□□□□□ -1.09
HDAC3-209ENST00000486618 GAKO14976 1311 aa8.24□□□□□ -1.09
HDAC3-209ENST00000486618 PEX14O75381 377 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 EIF3JO75822 258 aaKnown RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 MAP4K4O95819 1239 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 XRCC5P13010 732 aaKnown RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 LIG1P18858 919 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 CYP2B6P20813 491 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 SOX11P35716 441 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 IRX3P78415 501 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 USP4Q13107 963 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 SEMA3FQ13275 785 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 PICALMQ13492 652 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 PDE3AQ14432 1141 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 MAP3K21Q5TCX8 1036 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 CCAR1Q8IX12 1150 aaKnown RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 SOCS4Q8WXH5 440 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 TRIB2Q92519 343 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 POM121Q96HA1 1249 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 ASCC2Q9H1I8 757 aaPredicted RBP8.23□□□□□ -1.09
HDAC3-209ENST00000486618 MORF4L1Q9UBU8 362 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 ABCF2Q9UG63 623 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 DYRK1BQ9Y463 629 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 PTPRCP08575 1304 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 LAMA3Q16787 3333 aa8.23□□□□□ -1.09
HDAC3-209ENST00000486618 USP17L5A8MUK1 530 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 SH3BP5O60239 455 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CIAO1O76071 339 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 STAU1O95793 577 aaKnown RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 LDHCP07864 332 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 COL6A1P12109 1028 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 ZKSCAN1P17029 563 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 MAPK4P31152 587 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CAP2P40123 477 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 BTDP43251 543 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 PHKA1P46020 1223 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 RFX5P48382 616 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 HMGCS2P54868 508 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CENPCQ03188 943 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CCDC184Q52MB2 194 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 GIMAP6Q6P9H5 292 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CASC1Q6TDU7 716 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 ZNF662Q6ZS27 426 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 ATG9AQ7Z3C6 839 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CCDC84Q86UT8 332 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 TRIM22Q8IYM9 498 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 PLPP7Q8NBV4 271 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 GPRC5AQ8NFJ5 357 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 ZNF837Q96EG3 531 aaPredicted RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 XAGE2Q96GT9 111 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 USP44Q9H0E7 712 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 CHMP4BQ9H444 224 aaKnown RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 DDX4Q9NQI0 724 aaKnown RBP8.22□□□□□ -1.09
HDAC3-209ENST00000486618 TMOD4Q9NZQ9 345 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 PRKAG2Q9UGJ0 569 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 USTQ9Y2C2 406 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 PFASO15067 1338 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 RFX7Q2KHR2 1363 aa8.22□□□□□ -1.09
HDAC3-209ENST00000486618 LOC285556D6RIA3 1793 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 GPR75-ASB3A0A0A6YYF3 556 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 NRDCO43847 1150 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 CREB3O43889 395 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 HOXA7P31268 230 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 IL15P40933 162 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 RGS2P41220 211 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 GSTO1P78417 241 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 CACNB2Q08289 660 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 FOXD4Q12950 439 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 WDR44Q5JSH3 913 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 AXDND1Q5T1B0 1012 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 ZFYVE27Q5T4F4 411 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 CCDC102BQ68D86 513 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 RIPOR1Q6ZS17 1223 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 TAS1R3Q7RTX0 852 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 GTF3C2Q8WUA4 911 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 GUCD1Q96NT3 240 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 GAS2L1Q99501 681 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 SIL1Q9H173 461 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 ETNK1Q9HBU6 452 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 HERC5Q9UII4 1024 aaKnown RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 HDAC5Q9UQL6 1122 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 MROH7-TTC4A0A0A0MT08 1334 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 PDS5AQ29RF7 1337 aaKnown RBP8.21□□□□□ -1.1
HDAC3-209ENST00000486618 TTC28Q96AY4 2481 aa8.21□□□□□ -1.1
HDAC3-209ENST00000486618 PLXNB2O15031 1838 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 ATAD5Q96QE3 1844 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 FAM196BA6NMK8 535 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 C19orf81C9J6K1 198 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 PIK3CDO00329 1044 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 GLRX3O76003 335 aaKnown RBP8.2□□□□□ -1.1
HDAC3-209ENST00000486618 ASNSP08243 561 aa8.2□□□□□ -1.1
HDAC3-209ENST00000486618 SLURP2P0DP57 97 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms