RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 NFIBO00712 420 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 EPB41L2O43491 1005 aaKnown RBP17.17■□□□□ 0.34
USP4-212ENST00000486549 CASTP20810 708 aaKnown RBP17.17■□□□□ 0.34
USP4-212ENST00000486549 CNGA1P29973 690 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 DHX30Q7L2E3 1194 aaKnown RBP eCLIP17.17■□□□□ 0.34
USP4-212ENST00000486549 HOMER1Q86YM7 354 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 PNMA2Q9UL42 364 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 LCTP09848 1927 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 PFASO15067 1338 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 MCM3APO60318 1980 aa17.17■□□□□ 0.34
USP4-212ENST00000486549 DNAJC25-GNG10A0A024R161 153 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 PTPDC1A2A3K4 754 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 POTEB2H3BUK9 544 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 FARP2O94887 1054 aaPredicted RBP17.16■□□□□ 0.34
USP4-212ENST00000486549 PSMA5P28066 241 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 KIF5BP33176 963 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 CNTN2Q02246 1040 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 MICU3Q86XE3 530 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 FBXO11Q86XK2 927 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 ANKLE1Q8NAG6 615 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 PIBF1Q8WXW3 757 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 SHISA4Q96DD7 197 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 TINF2Q9BSI4 451 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 NAP1L2Q9ULW6 460 aaPredicted RBP17.16■□□□□ 0.34
USP4-212ENST00000486549 DIS3Q9Y2L1 958 aaKnown RBP17.16■□□□□ 0.34
USP4-212ENST00000486549 FRMPD3Q5JV73 1810 aa17.16■□□□□ 0.34
USP4-212ENST00000486549 CALM1P0DP23 149 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 CALM2P0DP24 149 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 CALM3P0DP25 149 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 CYBAP13498 195 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 SLC35G1Q2M3R5 365 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 PRAMEF19Q5SWL8 479 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 SYNE3Q6ZMZ3 975 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 Q6ZUG5 572 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 SGMS1Q86VZ5 419 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 TRPV1Q8NER1 839 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 DPF3Q92784 378 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 PIGSQ96S52 555 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 CRISPLD2Q9H0B8 497 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 CYP39A1Q9NYL5 469 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 ABCB11O95342 1321 aa17.15■□□□□ 0.34
USP4-212ENST00000486549 KLF18A0A0U1RQI7 1052 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 ZBTB5O15062 677 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 CYTH3O43739 400 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 PLEKHA8P1O95397 391 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 IGHA2P01877 340 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 RPS6KB1P23443 525 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 BAATQ14032 418 aaPredicted RBP17.14■□□□□ 0.33
USP4-212ENST00000486549 APOA5Q6Q788 366 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 SLC30A10Q6XR72 485 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 CLEC4DQ8WXI8 215 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 FGD4Q96M96 766 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 PURBQ96QR8 312 aaKnown RBP17.14■□□□□ 0.33
USP4-212ENST00000486549 MAP3K14Q99558 947 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 RIOX1Q9H6W3 641 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 BRPF3Q9ULD4 1205 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 NR2E3Q9Y5X4 410 aa17.14■□□□□ 0.33
USP4-212ENST00000486549 CALML3P27482 149 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 RNF207Q6ZRF8 634 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 UBE2Q1Q7Z7E8 422 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 CMTR1Q8N1G2 835 aaKnown RBP17.13■□□□□ 0.33
USP4-212ENST00000486549 FAM133AQ8N9E0 248 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 BRF1Q92994 677 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 MTMR8Q96EF0 704 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 AMNQ9BXJ7 453 aa17.13■□□□□ 0.33
USP4-212ENST00000486549 MKI67P46013 3256 aaKnown RBP17.13■□□□□ 0.33
USP4-212ENST00000486549 SOWAHBA6NEL2 793 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 GOLGA8AA7E2F4 631 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 GOLGA8BA8MQT2 603 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 ZBTB43O43298 467 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 PPP1R11O60927 126 aaPredicted RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 SEC24BO95487 1268 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 GNAQP50148 359 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 APOBRQ0VD83 1088 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 ANO1Q5XXA6 986 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 ARMCX2Q7L311 632 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 NECAB2Q7Z6G3 386 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 ZNF467Q7Z7K2 595 aaPredicted RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 CCDC82Q8N4S0 544 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 FANCBQ8NB91 859 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 UPF3BQ9BZI7 483 aaKnown RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 ZHX1Q9UKY1 873 aaPredicted RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 CNPY2Q9Y2B0 182 aa17.12■□□□□ 0.33
USP4-212ENST00000486549 MRPL11Q9Y3B7 192 aaKnown RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 DDX49Q9Y6V7 483 aaKnown RBP17.12■□□□□ 0.33
USP4-212ENST00000486549 LRRC37A2A6NM11 1700 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 EIF5BO60841 1220 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 RPS6P62753 249 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 RTN1Q16799 776 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 TMTC3Q6ZXV5 915 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 RUFY3Q7L099 469 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 SRBD1Q8N5C6 995 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 MSL3Q8N5Y2 521 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 RRP36Q96EU6 259 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 LZTS2Q9BRK4 669 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 SPZ1Q9BXG8 430 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 ZSWIM6Q9HCJ5 1215 aa17.11■□□□□ 0.33
USP4-212ENST00000486549 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 DDX20Q9UHI6 824 aaKnown RBP17.11■□□□□ 0.33
USP4-212ENST00000486549 PCDHA1Q9Y5I3 950 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms