RNA–Protein interactions for RNA: ENST00000485943.1

USP40-216, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 568 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-216ENST00000485943 MORF4L1Q9UBU8 362 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 SEC63Q9UGP8 760 aaKnown RBP9.37□□□□□ -0.91
USP40-216ENST00000485943 CCPG1Q9ULG6 757 aa9.37□□□□□ -0.91
USP40-216ENST00000485943 SLC15A5A6NIM6 579 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 B4DLN1 442 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 SLC27A2O14975 620 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 FOXP2O15409 715 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 PRC1O43663 620 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 CALM1P0DP23 149 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 CALM2P0DP24 149 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 CALM3P0DP25 149 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 MRPL12P52815 198 aaKnown RBP9.36□□□□□ -0.91
USP40-216ENST00000485943 SYDE2Q5VT97 1194 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 BLOC1S2Q6QNY1 142 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 LBX2Q6XYB7 198 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 CHST3Q7LGC8 479 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 NKX2-3Q8TAU0 364 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 SH3TC2Q8TF17 1288 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 TMEM87BQ96K49 555 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 APBA2Q99767 749 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 RNF208Q9H0X6 261 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 RAVER2Q9HCJ3 691 aaKnown RBP9.36□□□□□ -0.91
USP40-216ENST00000485943 VAT1LQ9HCJ6 419 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 FBXO28Q9NVF7 368 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 SLC12A7Q9Y666 1083 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 MYH6P13533 1939 aa9.36□□□□□ -0.91
USP40-216ENST00000485943 IGKV6D-41A0A0C4DH26 115 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 RCCD1A6NED2 376 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 HMGCRP04035 888 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 SLC16A2P36021 539 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 GNAQP50148 359 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 SOX10P56693 466 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 AKAP17AQ02040 695 aaKnown RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 TKFCQ3LXA3 575 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 NSMFQ6X4W1 530 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 SHCBP1Q8NEM2 672 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 JAKMIP1Q96N16 626 aaKnown RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.35□□□□□ -0.91
USP40-216ENST00000485943 MOV10L1Q9BXT6 1211 aaKnown RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 LSG1Q9H089 658 aaKnown RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 ACAD9Q9H845 621 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 TXNRD2Q9NNW7 524 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 IL17RBQ9NRM6 502 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 RBPJLQ9UBG7 517 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 PLXNB2O15031 1838 aa9.35□□□□□ -0.91
USP40-216ENST00000485943 COL11A1P12107 1806 aaPredicted RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 GREB1LQ9C091 1923 aaPredicted RBP9.35□□□□□ -0.91
USP40-216ENST00000485943 ADGRA2Q96PE1 1338 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PTPDC1A2A3K4 754 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 TFRCP02786 760 aaKnown RBP9.34□□□□□ -0.91
USP40-216ENST00000485943 FGRP09769 529 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 GOLGA8HP0CJ92 632 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PDHBP11177 359 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 ELNP15502 786 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 ADORA2AP29274 412 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 OAZ1P54368 228 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 IRF5Q13568 498 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 TMEM132BQ14DG7 1078 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 Q3C1V9 767 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 USH1GQ495M9 461 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 IFFO2Q5TF58 517 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 NOL8Q76FK4 1167 aaKnown RBP9.34□□□□□ -0.91
USP40-216ENST00000485943 HOMER1Q86YM7 354 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 RIOX2Q8IUF8 465 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 ENAHQ8N8S7 591 aaPredicted RBP9.34□□□□□ -0.91
USP40-216ENST00000485943 CHST13Q8NET6 341 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PCMTD1Q96MG8 357 aaPredicted RBP9.34□□□□□ -0.91
USP40-216ENST00000485943 TRERF1Q96PN7 1200 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PORCNQ9H237 461 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 IL25Q9H293 177 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 HMX1Q9NP08 348 aaPredicted RBP9.34□□□□□ -0.91
USP40-216ENST00000485943 RNF146Q9NTX7 359 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 BTBD7Q9P203 1132 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PRR12Q9ULL5 1215 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 GABRQQ9UN88 632 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 CNPY2Q9Y2B0 182 aa9.34□□□□□ -0.91
USP40-216ENST00000485943 PFASO15067 1338 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 DOCK3Q8IZD9 2030 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 PEX10O60683 326 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 INHAP05111 366 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 CASTP20810 708 aaKnown RBP9.33□□□□□ -0.92
USP40-216ENST00000485943 ZNF543Q08ER8 600 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 KIAA1755Q5JYT7 1200 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 NUDT18Q6ZVK8 323 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 CYB5R4Q7L1T6 521 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 SIAH1Q8IUQ4 282 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 PIBF1Q8WXW3 757 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 CUL5Q93034 780 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 RRP36Q96EU6 259 aaKnown RBP9.33□□□□□ -0.92
USP40-216ENST00000485943 UBA5Q9GZZ9 404 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 CYP46A1Q9Y6A2 500 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 ZSWIM8A7E2V4 1837 aa9.33□□□□□ -0.92
USP40-216ENST00000485943 CCDC196A0A1B0GTZ2 297 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 KLRF2D3W0D1 207 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 PLA2G6O60733 806 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 DDAH1O94760 285 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 CCL5P13501 91 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 SNAP25P60880 206 aa9.32□□□□□ -0.92
USP40-216ENST00000485943 SKIV2LQ15477 1246 aaKnown RBP9.32□□□□□ -0.92
USP40-216ENST00000485943 CDC37Q16543 378 aaPredicted RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms