RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 ISY1Q9ULR0 285 aaKnown RBP16.46■□□□□ 0.23
SQSTM1-208ENST00000485412 TTC41PQ6P2S7 1318 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 SALL3Q9BXA9 1300 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 MUC3AQ02505 3323 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 SOWAHBA6NEL2 793 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 CYP2C18P33260 490 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 MRPS5P82675 430 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 TMEM63BQ5T3F8 832 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 VPS53Q5VIR6 699 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 KCTD1Q719H9 257 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 NOL8Q76FK4 1167 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 FAM133AQ8N9E0 248 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 CHST13Q8NET6 341 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 NAPBQ9H115 298 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 NKX2-4Q9H2Z4 354 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 A1CFQ9NQ94 594 aaKnown RBP16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 IL17RBQ9NRM6 502 aa16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.45■□□□□ 0.22
SQSTM1-208ENST00000485412 FGBP02675 491 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 MCCP23508 829 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 BEX3Q00994 111 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 ADGRE1Q14246 886 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 MUM1L1Q5H9M0 696 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 HERVK_113Q902F9 699 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 PURBQ96QR8 312 aaKnown RBP16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 UHRF1Q96T88 793 aaPredicted RBP16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 SLC28A3Q9HAS3 691 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 RNF146Q9NTX7 359 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 CHD7Q9P2D1 2997 aa16.44■□□□□ 0.22
SQSTM1-208ENST00000485412 REV3LO60673 3130 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 NCOR1O75376 2440 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 CD4P01730 458 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 MX1P20591 662 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 STAT2P52630 851 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 OAZ1P54368 228 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 TNFAIP2Q03169 654 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 PDE4BQ07343 736 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 NACAP1Q9BZK3 213 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 TSPYL2Q9H2G4 693 aaPredicted RBP16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 HIPK3Q9H422 1215 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 ZNF287Q9HBT7 754 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 CXXC1Q9P0U4 656 aaPredicted RBP16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 RAPGEFL1Q9UHV5 662 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 SYNPO2Q9UMS6 1093 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 MTMR7Q9Y216 660 aa16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 TCF20Q9UGU0 1960 aaKnown RBP16.43■□□□□ 0.22
SQSTM1-208ENST00000485412 SLC1A4P43007 532 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 CXCL17Q6UXB2 119 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 OTOP2Q7RTS6 562 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 GMCL1Q96IK5 515 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 ACAD9Q9H845 621 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 PDGFCQ9NRA1 345 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 STX8Q9UNK0 236 aa16.42■□□□□ 0.22
SQSTM1-208ENST00000485412 ERC2O15083 957 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 ZEB2O60315 1214 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 CABYRO75952 493 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 ALAS1P13196 640 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 IKQ13123 557 aaPredicted RBP16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 TLK2Q86UE8 772 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 MICALL1Q8N3F8 863 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 STAG1Q8WVM7 1258 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 TRERF1Q96PN7 1200 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 AP5M1Q9H0R1 490 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 PRR12Q9ULL5 1215 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 YBX2Q9Y2T7 364 aaKnown RBP16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 UMODL1Q5DID0 1318 aa16.41■□□□□ 0.22
SQSTM1-208ENST00000485412 ASB14A6NK59 587 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 TSPY2A6NKD2 308 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 CCL23P55773 120 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 NKX3-2P78367 333 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 ITGA7Q13683 1181 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 FSCN1Q16658 493 aaKnown RBP16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 PPP2R2DQ66LE6 453 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 TTBK2Q6IQ55 1244 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 EEPD1Q7L9B9 569 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 FBXO16Q8IX29 292 aaPredicted RBP16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 GNEQ9Y223 722 aaKnown RBP16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 GRIN2DO15399 1336 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 SCN5AQ14524 2016 aa16.4■□□□□ 0.22
SQSTM1-208ENST00000485412 ZBBXA8MT70 800 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 FDX1P10109 184 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 SMPD1P17405 629 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 SLC16A2P36021 539 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 RABGGTBP53611 331 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 RCSD1Q6JBY9 416 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 FAM160B2Q86V87 743 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 RPUSD2Q8IZ73 545 aaKnown RBP16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 SLC43A3Q8NBI5 491 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 CHURC1Q8WUH1 139 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 FAM227BQ96M60 508 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 CYP39A1Q9NYL5 469 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 SLC4A7Q9Y6M7 1214 aa16.39■□□□□ 0.21
SQSTM1-208ENST00000485412 A0A0D9SFI3 127 aa16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 DYNC1LI2O43237 492 aaPredicted RBP16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 RANBP6O60518 1105 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 SLC3A2P08195 630 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 NOVP48745 357 aa16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 LRRFIP1Q32MZ4 808 aaKnown RBP16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 TAPT1Q6NXT6 567 aa16.38■□□□□ 0.21
SQSTM1-208ENST00000485412 NOC4LQ9BVI4 516 aaKnown RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms