RNA–Protein interactions for RNA: ENST00000483876.1

COL17A1-206, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 622 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-206ENST00000483876 C9orf50Q5SZB4 431 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 TATDN1Q6P1N9 297 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 RAB11FIP4Q86YS3 637 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 CCDC144CPQ8IYA2 1237 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 ELOA2Q8IYF1 753 aaPredicted RBP6.22□□□□□ -1.41
COL17A1-206ENST00000483876 STK11IPQ8N1F8 1099 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 OGFOD1Q8N543 542 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 SRBD1Q8N5C6 995 aaKnown RBP6.22□□□□□ -1.41
COL17A1-206ENST00000483876 ENGASEQ8NFI3 743 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 OPTNQ96CV9 577 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 PHF20Q9BVI0 1012 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 BRMS1Q9HCU9 246 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 MTMR4Q9NYA4 1195 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 CXXC1Q9P0U4 656 aaPredicted RBP6.22□□□□□ -1.41
COL17A1-206ENST00000483876 SAP30BPQ9UHR5 308 aaKnown RBP6.22□□□□□ -1.41
COL17A1-206ENST00000483876 CEP131Q9UPN4 1083 aa6.22□□□□□ -1.41
COL17A1-206ENST00000483876 BAZ2AQ9UIF9 1905 aaKnown RBP6.22□□□□□ -1.41
COL17A1-206ENST00000483876 ATRNL1Q5VV63 1379 aa6.21□□□□□ -1.41
COL17A1-206ENST00000483876 SYCE3A1L190 88 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 BTBD18B2RXH4 712 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 KIF28PB7ZC32 967 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 F8W031 263 aaPredicted RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 hCG_1984214I3L0E3 225 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 WNT10BO00744 389 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TBC1D12O60347 775 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 NMT2O60551 498 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 DTNBO60941 627 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TTLL1O95922 423 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 SNHG28P0DPA3 235 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 SCG2P13521 617 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ELNP15502 786 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 GUCY1A2P33402 732 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ME1P48163 572 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 IREB2P48200 963 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 KCNQ1P51787 676 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 GUCY1B3Q02153 619 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TFF2Q03403 129 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 EVX2Q03828 476 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 FAM160A1Q05DH4 1040 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 GNL2Q13823 731 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 STK38Q15208 465 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 PTPAQ15257 358 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 SF3A1Q15459 793 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 AXDND1Q5T1B0 1012 aaPredicted RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 C17orf99Q6UX52 265 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 APOBEC3FQ8IUX4 373 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 KIAA0825Q8IV33 1275 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TEX2Q8IWB9 1127 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 CCAR1Q8IX12 1150 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 DIS3L2Q8IYB7 885 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ANKRD13AQ8IZ07 590 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ZNF713Q8N859 430 aaPredicted RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ZNF579Q8NAF0 562 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 FBXW7Q969H0 707 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TIGD1Q96MW7 591 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 MXD3Q9BW11 206 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 SPZ1Q9BXG8 430 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 TSPY26PQ9H489 355 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 CLSTN2Q9H4D0 955 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ZNF576Q9H609 170 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 KANSL2Q9H9L4 492 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 ELP3Q9H9T3 547 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 DDX4Q9NQI0 724 aaKnown RBP6.21□□□□□ -1.42
COL17A1-206ENST00000483876 NYAP2Q9P242 653 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 CPA4Q9UI42 421 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 MAD2L2Q9UI95 211 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 PCDHA7Q9UN72 937 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 PFASO15067 1338 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 LAMB1P07942 1786 aa6.21□□□□□ -1.42
COL17A1-206ENST00000483876 NCOR1O75376 2440 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 SPDYE2BA6NHP3 402 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 KLRF2D3W0D1 207 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CUTAO60888 179 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 PPFIA3O75145 1194 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 PLEKHA8P1O95397 391 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 PARP1P09874 1014 aaKnown RBP6.2□□□□□ -1.42
COL17A1-206ENST00000483876 SPDYE6P0CI01 402 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CCDC192P0DO97 292 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 LIG1P18858 919 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 SHMT1P34896 483 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 KRT2P35908 639 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 TOB1P50616 345 aaPredicted RBP6.2□□□□□ -1.42
COL17A1-206ENST00000483876 RBM5P52756 815 aaKnown RBP eCLIP6.2□□□□□ -1.42
COL17A1-206ENST00000483876 MAP3K10Q02779 954 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 SNW1Q13573 536 aaKnown RBP6.2□□□□□ -1.42
COL17A1-206ENST00000483876 LRRC26Q2I0M4 334 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CFAP100Q494V2 611 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 ASPRV1Q53RT3 343 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CCDC73Q6ZRK6 1079 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 FAM83AQ86UY5 434 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CCDC82Q8N4S0 544 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 DAGLBQ8NCG7 672 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 SLC44A5Q8NCS7 719 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CCDC148Q8NFR7 591 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 BICD2Q8TD16 824 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 PXYLP1Q8TE99 480 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 CCDC12Q8WUD4 166 aaPredicted RBP6.2□□□□□ -1.42
COL17A1-206ENST00000483876 FAM151AQ8WW52 585 aa6.2□□□□□ -1.42
COL17A1-206ENST00000483876 ANP32BQ92688 251 aaKnown RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms