RNA–Protein interactions for RNA: ENST00000483519.5

USP40-214, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 1 (best)

Gene USP40, Length 2,722 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-214ENST00000483519 SRGNP10124 158 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 HNRNPH1P31943 449 aaKnown RBP14.83□□□□□ -0.04
USP40-214ENST00000483519 VAV2P52735 878 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 ZBED6P86452 979 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 SETQ01105 290 aaPredicted RBP14.83□□□□□ -0.04
USP40-214ENST00000483519 CATIPQ7Z7H3 387 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 LCORLQ8N3X6 602 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 TRIM47Q96LD4 638 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 EXOC1Q9NV70 894 aa14.83□□□□□ -0.04
USP40-214ENST00000483519 V9GY48 417 aaPredicted RBP14.83□□□□□ -0.04
USP40-214ENST00000483519 TRIM49BA6NDI0 452 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 PSMA7O14818 248 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 TACC1O75410 805 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 KIAA0754O94854 1291 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 STAT6P42226 847 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 PPARAQ07869 468 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 SPA17Q15506 151 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 TMOD3Q9NYL9 352 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 BCORQ6W2J9 1755 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 LOC102724159A0A0B4J2E5 919 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 RCCD1A6NED2 376 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 USO1O60763 962 aaKnown RBP14.82□□□□□ -0.04
USP40-214ENST00000483519 PRLRP16471 622 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 LONP1P36776 959 aaKnown RBP14.82□□□□□ -0.04
USP40-214ENST00000483519 FUT2Q10981 343 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 SEMA3FQ13275 785 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 PWP2Q15269 919 aaKnown RBP14.82□□□□□ -0.04
USP40-214ENST00000483519 CREG2Q8IUH2 290 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 ACSBG1Q96GR2 724 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 TTYH3Q9C0H2 523 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 ITGB4P16144 1822 aa14.82□□□□□ -0.04
USP40-214ENST00000483519 CALM1P0DP23 149 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 CALM2P0DP24 149 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 CALM3P0DP25 149 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 SLC5A1P13866 664 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 CDK17Q00537 523 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 KCNB1Q14721 858 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 ARL6IP4Q66PJ3 421 aaKnown RBP14.81□□□□□ -0.04
USP40-214ENST00000483519 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.81□□□□□ -0.04
USP40-214ENST00000483519 RRP36Q96EU6 259 aaKnown RBP14.81□□□□□ -0.04
USP40-214ENST00000483519 MYH3P11055 1940 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 SBF2Q86WG5 1849 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 NHSQ6T4R5 1651 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 B4DLN1 442 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 NDUFAB1O14561 156 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 TRIM37O94972 964 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 CHRM1P11229 460 aaPredicted RBP14.81□□□□□ -0.04
USP40-214ENST00000483519 RASGRF1Q13972 1273 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 GPATCH11Q8N954 259 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 CAVIN3Q969G5 261 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 LRRC1Q9BTT6 524 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 EHD4Q9H223 541 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 AGPAT5Q9NUQ2 364 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 MROH5Q6ZUA9 1318 aa14.81□□□□□ -0.04
USP40-214ENST00000483519 ANKRD36CQ5JPF3 1778 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 hCG_1642624A0A1W2PR95 340 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 MYL1P05976 194 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 TCP1P17987 556 aaKnown RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 TNFRSF8P28908 595 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 MCM7P33993 719 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 GSCP56915 257 aaPredicted RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 CCDC96Q2M329 555 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 FBXW10Q5XX13 1052 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 PRPF38AQ8NAV1 312 aaKnown RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 SPATA4Q8NEY3 305 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 IQCDQ96DY2 449 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 TUBGCP2Q9BSJ2 902 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 STIM2Q9P246 746 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 DOT1LQ8TEK3 1739 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 PLEKHA8P1O95397 391 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 FGFR2P21802 821 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 NNTQ13423 1086 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 NPY5RQ15761 445 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 IFIT1BQ5T764 474 aaKnown RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 CCDC181Q5TID7 509 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 MICALCLQ6ZW33 695 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 CCDC42Q96M95 316 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 PCMTD1Q96MG8 357 aaPredicted RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 ALS2CR12Q96Q35 445 aa14.8□□□□□ -0.04
USP40-214ENST00000483519 ZSCAN10Q96SZ4 725 aaPredicted RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 DMGDHQ9UI17 866 aaKnown RBP14.8□□□□□ -0.04
USP40-214ENST00000483519 A0A1W2PQJ5 194 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 APBA1Q02410 837 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 KCNV1Q6PIU1 500 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 GIGYF2Q6Y7W6 1299 aaKnown RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 PIK3AP1Q6ZUJ8 805 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 FAM114A1Q8IWE2 563 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 SYNE4Q8N205 404 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 OTUD6BQ8N6M0 293 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 ENAHQ8N8S7 591 aaPredicted RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 RABEP2Q9H5N1 569 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 DISC1Q9NRI5 854 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 HYOU1Q9Y4L1 999 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 DUSP10Q9Y6W6 482 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 H0YHG0 523 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 ZEB2O60315 1214 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 HMGB2P26583 209 aaKnown RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 PMS1P54277 932 aaKnown RBP14.79□□□□□ -0.04
USP40-214ENST00000483519 TBC1D8BQ0IIM8 1120 aa14.79□□□□□ -0.04
USP40-214ENST00000483519 IL17AQ16552 155 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms