RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 FAM160B2Q86V87 743 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 JMYQ8N9B5 988 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 TBCKQ8TEA7 893 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 CLSTN2Q9H4D0 955 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 DDX19AQ9NUU7 478 aaKnown RBP16.5■□□□□ 0.23
COL4A6-206ENST00000477085 CEP131Q9UPN4 1083 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 AFG3L2Q9Y4W6 797 aa16.5■□□□□ 0.23
COL4A6-206ENST00000477085 MAP3K9P80192 1104 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 NONOQ15233 471 aaKnown RBP eCLIP16.49■□□□□ 0.23
COL4A6-206ENST00000477085 LRSAM1Q6UWE0 723 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 USP49Q70CQ1 688 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 CNKSR2Q8WXI2 1034 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 CUL5Q93034 780 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 CSRNP2Q9H175 543 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 PAPPA2Q9BXP8 1791 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 PHIPQ8WWQ0 1821 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 IQCA1LA6NCM1 817 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 MRPL12P52815 198 aaKnown RBP16.49■□□□□ 0.23
COL4A6-206ENST00000477085 CCDC174Q6PII3 467 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 SAMD1Q6SPF0 538 aaPredicted RBP16.49■□□□□ 0.23
COL4A6-206ENST00000477085 CCDC73Q6ZRK6 1079 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 WDR90Q96KV7 1748 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 FUCA2Q9BTY2 467 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 NUP62CLQ9H1M0 184 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 TMEM60Q9H2L4 133 aa16.49■□□□□ 0.23
COL4A6-206ENST00000477085 SCN4AP35499 1836 aa16.48■□□□□ 0.23
COL4A6-206ENST00000477085 ZNF536O15090 1300 aa16.48■□□□□ 0.23
COL4A6-206ENST00000477085 HMGCS2P54868 508 aa16.48■□□□□ 0.23
COL4A6-206ENST00000477085 RBM43Q6ZSC3 357 aaKnown RBP16.48■□□□□ 0.23
COL4A6-206ENST00000477085 ZNF579Q8NAF0 562 aaKnown RBP16.48■□□□□ 0.23
COL4A6-206ENST00000477085 RPAP3Q9H6T3 665 aaPredicted RBP16.48■□□□□ 0.23
COL4A6-206ENST00000477085 AS3MTQ9HBK9 375 aa16.48■□□□□ 0.23
COL4A6-206ENST00000477085 ZNF202O95125 648 aa16.47■□□□□ 0.23
COL4A6-206ENST00000477085 FMR1Q06787 632 aaKnown RBP eCLIP16.47■□□□□ 0.23
COL4A6-206ENST00000477085 LETM2Q2VYF4 491 aa16.47■□□□□ 0.23
COL4A6-206ENST00000477085 NEK8Q86SG6 692 aa16.47■□□□□ 0.23
COL4A6-206ENST00000477085 TBC1D5Q92609 795 aa16.47■□□□□ 0.23
COL4A6-206ENST00000477085 ZBTB4Q9P1Z0 1013 aaPredicted RBP16.47■□□□□ 0.23
COL4A6-206ENST00000477085 PPP1R12BO60237 982 aaPredicted RBP16.46■□□□□ 0.23
COL4A6-206ENST00000477085 BMP15O95972 392 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 USP14P54578 494 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 PNMA8AQ86V59 439 aaPredicted RBP16.46■□□□□ 0.23
COL4A6-206ENST00000477085 CKAP2LQ8IYA6 745 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 PRPF38AQ8NAV1 312 aaKnown RBP16.46■□□□□ 0.23
COL4A6-206ENST00000477085 WNK4Q96J92 1243 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 CLMNQ96JQ2 1002 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 C12orf42Q96LP6 360 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 SLF1Q9BQI6 1058 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 TNMDQ9H2S6 317 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 SMCHD1A6NHR9 2005 aa16.46■□□□□ 0.23
COL4A6-206ENST00000477085 GOLGA6L3A6NEY3 463 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 CCNT1O60563 726 aaKnown RBP16.46■□□□□ 0.22
COL4A6-206ENST00000477085 LETM1O95202 739 aaPredicted RBP16.46■□□□□ 0.22
COL4A6-206ENST00000477085 FERMT2Q96AC1 680 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 EPSTI1Q96J88 318 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 AGBL1Q96MI9 1066 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 TANGO6Q9C0B7 1094 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 RBSNQ9H1K0 784 aa16.46■□□□□ 0.22
COL4A6-206ENST00000477085 VWA3AA6NCI4 1184 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 C19orf81C9J6K1 198 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 TRAF5O00463 557 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 MAP1SQ66K74 1059 aaPredicted RBP16.45■□□□□ 0.22
COL4A6-206ENST00000477085 LDHDQ86WU2 507 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 RRAGCQ9HB90 399 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 SLC38A10Q9HBR0 1119 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 KCNH3Q9ULD8 1083 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 PPP1R9AQ9ULJ8 1098 aa16.45■□□□□ 0.22
COL4A6-206ENST00000477085 OTOFQ9HC10 1997 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 A0A087X0B3 334 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 KINO60870 393 aaKnown RBP16.44■□□□□ 0.22
COL4A6-206ENST00000477085 FLOT1O75955 427 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 TDP2O95551 362 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 HOXA13P31271 388 aaPredicted RBP16.44■□□□□ 0.22
COL4A6-206ENST00000477085 SYKP43405 635 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 MAP3K11Q16584 847 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 LONRF3Q496Y0 759 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 SH3D19Q5HYK7 790 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 CRYGNQ8WXF5 182 aa16.44■□□□□ 0.22
COL4A6-206ENST00000477085 ERCC4Q92889 916 aaPredicted RBP16.44■□□□□ 0.22
COL4A6-206ENST00000477085 SLC37A4O43826 429 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ICAM1P05362 532 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 IREB2P48200 963 aaKnown RBP16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ARL6IP4Q66PJ3 421 aaKnown RBP16.43■□□□□ 0.22
COL4A6-206ENST00000477085 PANK2Q9BZ23 570 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 GLT8D2Q9H1C3 349 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ELP3Q9H9T3 547 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 CLEC11AQ9Y240 323 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.43■□□□□ 0.22
COL4A6-206ENST00000477085 PIK3CDO00329 1044 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 POTEDQ86YR6 584 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 SYMPKQ92797 1274 aaKnown RBP16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ATG4CQ96DT6 458 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 MTMR9Q96QG7 549 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 ANO3Q9BYT9 981 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 RAVER2Q9HCJ3 691 aaKnown RBP16.43■□□□□ 0.22
COL4A6-206ENST00000477085 CSADQ9Y600 493 aa16.43■□□□□ 0.22
COL4A6-206ENST00000477085 VWA5AO00534 786 aa16.42■□□□□ 0.22
COL4A6-206ENST00000477085 CATSPERGQ6ZRH7 1159 aa16.42■□□□□ 0.22
COL4A6-206ENST00000477085 ANKRD13AQ8IZ07 590 aa16.42■□□□□ 0.22
COL4A6-206ENST00000477085 REPS2Q8NFH8 660 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms