RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 SHISA4Q96DD7 197 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 DDX11Q96FC9 970 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 PIGSQ96S52 555 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 RIOX1Q9H6W3 641 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 PAK6Q9NQU5 681 aaPredicted RBP11.29□□□□□ -0.6
HDAC3-208ENST00000476739 FBXO40Q9UH90 709 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 SLC12A7Q9Y666 1083 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 DDX49Q9Y6V7 483 aaKnown RBP11.29□□□□□ -0.6
HDAC3-208ENST00000476739 ASTN1O14525 1302 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 RPTORQ8N122 1335 aa11.29□□□□□ -0.6
HDAC3-208ENST00000476739 SOWAHBA6NEL2 793 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 HMGB1P09429 215 aaKnown RBP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 APOBRQ0VD83 1088 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 OLFML2BQ68BL8 750 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 APOA5Q6Q788 366 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 NSMFQ6X4W1 530 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 HOMER1Q86YM7 354 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 TRMT44Q8IYL2 757 aaKnown RBP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 SRBD1Q8N5C6 995 aaKnown RBP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 FAM133AQ8N9E0 248 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 CTCFLQ8NI51 663 aaPredicted RBP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 PIBF1Q8WXW3 757 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 TBC1D5Q92609 795 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 BRF1Q92994 677 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 MAP3K14Q99558 947 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 TMEM106CQ9BVX2 250 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 UPF3BQ9BZI7 483 aaKnown RBP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.28□□□□□ -0.6
HDAC3-208ENST00000476739 ZSWIM6Q9HCJ5 1215 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 CYP39A1Q9NYL5 469 aa11.28□□□□□ -0.6
HDAC3-208ENST00000476739 MCM3APO60318 1980 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 KLF18A0A0U1RQI7 1052 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 OPLAHO14841 1288 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 ZBTB5O15062 677 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 GJB1P08034 283 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 CYBAP13498 195 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 PSMA5P28066 241 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 BAATQ14032 418 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 TOB2Q14106 344 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 MFSD14CQ5VZR4 134 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 SLC30A10Q6XR72 485 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 RUFY3Q7L099 469 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 CCDC82Q8N4S0 544 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 FANCBQ8NB91 859 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 U2AF1L4Q8WU68 220 aaKnown RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 DEFB118Q96PH6 123 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 LARP6Q9BRS8 491 aaKnown RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 TINF2Q9BSI4 451 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 AGXT2Q9BYV1 514 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 HMX1Q9NP08 348 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 FAM217BQ9NTX9 383 aaPredicted RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 SLC5A4Q9NY91 659 aa11.27□□□□□ -0.61
HDAC3-208ENST00000476739 DIS3Q9Y2L1 958 aaKnown RBP11.27□□□□□ -0.61
HDAC3-208ENST00000476739 hCG_1642624A0A1W2PR95 340 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 POTEB2H3BUK9 544 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 SGPL1O95470 568 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 SNAI1O95863 264 aaPredicted RBP11.26□□□□□ -0.61
HDAC3-208ENST00000476739 CALM1P0DP23 149 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 CALM2P0DP24 149 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 CALM3P0DP25 149 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 CDC27P30260 824 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 KIF5BP33176 963 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 GJA8P48165 433 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 RGS19P49795 217 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 TMTC3Q6ZXV5 915 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 FBXO11Q86XK2 927 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 FBXL16Q8N461 479 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 SPZ1Q9BXG8 430 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 AMNQ9BXJ7 453 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 ABCB11O95342 1321 aa11.26□□□□□ -0.61
HDAC3-208ENST00000476739 PNMA6FA0A0J9YX94 578 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 PTPDC1A2A3K4 754 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 ZBTB43O43298 467 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 CALML3P27482 149 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 RPS6P62753 249 aaKnown RBP11.25□□□□□ -0.61
HDAC3-208ENST00000476739 FGD1P98174 961 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 FUT2Q10981 343 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 ANO1Q5XXA6 986 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 LHX8Q68G74 356 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 MAMDC4Q6UXC1 1216 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 RNF207Q6ZRF8 634 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 ARMCX2Q7L311 632 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 TM6SF1Q9BZW5 370 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 COL20A1Q9P218 1284 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 NAP1L2Q9ULW6 460 aaPredicted RBP11.25□□□□□ -0.61
HDAC3-208ENST00000476739 PCDHA1Q9Y5I3 950 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 CYP46A1Q9Y6A2 500 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 PFASO15067 1338 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 FRMPD3Q5JV73 1810 aa11.25□□□□□ -0.61
HDAC3-208ENST00000476739 GOLGA8AA7E2F4 631 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 GOLGA8BA8MQT2 603 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 ZNF865P0CJ78 1059 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-208ENST00000476739 SMARCA1P28370 1054 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 CNGA1P29973 690 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 ADD1P35611 737 aaKnown RBP11.24□□□□□ -0.61
HDAC3-208ENST00000476739 MNX1P50219 401 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-208ENST00000476739 RTN1Q16799 776 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 SYNE3Q6ZMZ3 975 aa11.24□□□□□ -0.61
HDAC3-208ENST00000476739 ZNF467Q7Z7K2 595 aaPredicted RBP11.24□□□□□ -0.61
HDAC3-208ENST00000476739 LENG1Q96BZ8 264 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms