RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 SH3RF1Q7Z6J0 888 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 DGKHQ86XP1 1220 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 CLEC4DQ8WXI8 215 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 ANKS1AQ92625 1134 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 ABHD16BQ9H3Z7 469 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 TAF6LQ9Y6J9 622 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 DUSP11O75319 330 aaKnown RBP16.59■□□□□ 0.25
UPF3A-204ENST00000475218 GOLGA8HP0CJ92 632 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 CHMLP26374 656 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 PTH1RQ03431 593 aa16.59■□□□□ 0.25
UPF3A-204ENST00000475218 ENAHQ8N8S7 591 aaPredicted RBP16.59■□□□□ 0.25
UPF3A-204ENST00000475218 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.58■□□□□ 0.24
UPF3A-204ENST00000475218 TMEM63BQ5T3F8 832 aa16.58■□□□□ 0.24
UPF3A-204ENST00000475218 RNF180Q86T96 592 aa16.58■□□□□ 0.24
UPF3A-204ENST00000475218 UPF3AQ9H1J1 476 aaKnown RBP16.58■□□□□ 0.24
UPF3A-204ENST00000475218 PDLIM7Q9NR12 457 aa16.58■□□□□ 0.24
UPF3A-204ENST00000475218 TRIM43BA6NCK2 446 aa16.57■□□□□ 0.24
UPF3A-204ENST00000475218 ACLYP53396 1101 aa16.57■□□□□ 0.24
UPF3A-204ENST00000475218 IMMTQ16891 758 aaKnown RBP16.57■□□□□ 0.24
UPF3A-204ENST00000475218 TDHQ8IZJ6 230 aa16.57■□□□□ 0.24
UPF3A-204ENST00000475218 MORC4Q8TE76 937 aa16.57■□□□□ 0.24
UPF3A-204ENST00000475218 TRIM43Q96BQ3 446 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-204ENST00000475218 ZSCAN10Q96SZ4 725 aaPredicted RBP16.57■□□□□ 0.24
UPF3A-204ENST00000475218 UBE2OQ9C0C9 1292 aaKnown RBP16.57■□□□□ 0.24
UPF3A-204ENST00000475218 ITGB8P26012 769 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 CST5P28325 142 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-204ENST00000475218 GJA9P57773 515 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 NKX3-2P78367 333 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 TLE2Q04725 743 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 BAATQ14032 418 aaPredicted RBP16.56■□□□□ 0.24
UPF3A-204ENST00000475218 KCNA10Q16322 511 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 NSMFQ6X4W1 530 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 CYB5R4Q7L1T6 521 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 PNMA1Q8ND90 353 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 TSEN34Q9BSV6 310 aaKnown RBP16.56■□□□□ 0.24
UPF3A-204ENST00000475218 UBA5Q9GZZ9 404 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 PDGFCQ9NRA1 345 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 TNKSO95271 1327 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 RAD50Q92878 1312 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 NT5C2P49902 561 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 SEC23AQ15436 765 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 LRIT3Q3SXY7 679 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 TAPT1Q6NXT6 567 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 SLC30A10Q6XR72 485 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 CTNNA3Q9UI47 895 aa16.56■□□□□ 0.24
UPF3A-204ENST00000475218 GNEQ9Y223 722 aaKnown RBP16.56■□□□□ 0.24
UPF3A-204ENST00000475218 CYP21A2P08686 494 aa16.55■□□□□ 0.24
UPF3A-204ENST00000475218 WDR19Q8NEZ3 1342 aa16.55■□□□□ 0.24
UPF3A-204ENST00000475218 SGSM2O43147 1006 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 GPATCH4Q5T3I0 446 aaKnown RBP16.54■□□□□ 0.24
UPF3A-204ENST00000475218 SKAP1Q86WV1 359 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 IQCA1Q86XH1 822 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 FBXO16Q8IX29 292 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-204ENST00000475218 ASB14A6NK59 587 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 C6orf222P0C671 652 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-204ENST00000475218 SMPD1P17405 629 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 EEPD1Q7L9B9 569 aa16.54■□□□□ 0.24
UPF3A-204ENST00000475218 PRDM5Q9NQX1 630 aaPredicted RBP16.54■□□□□ 0.24
UPF3A-204ENST00000475218 MOXD2PA6NHM9 499 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 ASGR1P07306 291 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 ALDH5A1P51649 535 aaPredicted RBP16.53■□□□□ 0.24
UPF3A-204ENST00000475218 BEX3Q00994 111 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 TNFAIP2Q03169 654 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 SLC35G1Q2M3R5 365 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 STOX1Q6ZVD7 989 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 ANKRD33Q7Z3H0 272 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 BADQ92934 168 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 KRT23Q9C075 422 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 KAT14Q9H8E8 782 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 CNNM2Q9H8M5 875 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 SENP2Q9HC62 589 aa16.53■□□□□ 0.24
UPF3A-204ENST00000475218 PQBP1O60828 265 aaKnown RBP16.52■□□□□ 0.24
UPF3A-204ENST00000475218 CDK7P50613 346 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 RPS6P62753 249 aaKnown RBP16.52■□□□□ 0.24
UPF3A-204ENST00000475218 FAAP100Q0VG06 881 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 CCDC178Q5BJE1 867 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 ADGRF4Q8IZF3 695 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 STAG2Q8N3U4 1231 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 TBC1D5Q92609 795 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 STARD7Q9NQZ5 370 aa16.52■□□□□ 0.24
UPF3A-204ENST00000475218 KIAA0355O15063 1070 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 EPHB4P54760 987 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 COL9A3Q14050 684 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-204ENST00000475218 CDC37Q16543 378 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-204ENST00000475218 GNASQ5JWF2 1037 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 LBHD1Q9BQE6 289 aaPredicted RBP16.51■□□□□ 0.23
UPF3A-204ENST00000475218 PTPDC1A2A3K4 754 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 CLTBP09497 229 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 EDNRBP24530 442 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 USH1GQ495M9 461 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 ASPRV1Q53RT3 343 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 C9orf50Q5SZB4 431 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 TLK2Q86UE8 772 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 MAP4K1Q92918 833 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 JMJD4Q9H9V9 463 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 COL20A1Q9P218 1284 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 ELP1O95163 1332 aa16.51■□□□□ 0.23
UPF3A-204ENST00000475218 MYH6P13533 1939 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 CALML3P27482 149 aa16.5■□□□□ 0.23
UPF3A-204ENST00000475218 SHHQ15465 462 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms