RNA–Protein interactions for RNA: ENST00000474643.5

VARS-223, Transcript of valyl-tRNA synthetase, humanhuman

TSL 5

Gene VARS, Length 885 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-223ENST00000474643 MPHOSPH6Q99547 160 aaKnown RBP17.74■□□□□ 0.43
VARS-223ENST00000474643 AP5M1Q9H0R1 490 aa17.74■□□□□ 0.43
VARS-223ENST00000474643 CTNNA3Q9UI47 895 aa17.74■□□□□ 0.43
VARS-223ENST00000474643 MROH7Q68CQ1 1323 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 PTPDC1A2A3K4 754 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 TNFAIP2Q03169 654 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 IMMTQ16891 758 aaKnown RBP17.73■□□□□ 0.43
VARS-223ENST00000474643 GNASQ5JWF2 1037 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 DSCC1Q9BVC3 393 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 TCP11L1Q9NUJ3 509 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 ADD3Q9UEY8 706 aaKnown RBP17.73■□□□□ 0.43
VARS-223ENST00000474643 PNMA2Q9UL42 364 aa17.73■□□□□ 0.43
VARS-223ENST00000474643 ZNF536O15090 1300 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 FGRP09769 529 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 CCDC178Q5BJE1 867 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 BMP2KLQ5H9B9 411 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 CASC1Q6TDU7 716 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 KIAA1211Q6ZU35 1233 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 TBC1D10CQ8IV04 446 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 FAM133AQ8N9E0 248 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 TTC14Q96N46 770 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 ZKSCAN3Q9BRR0 538 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 KAT14Q9H8E8 782 aa17.72■□□□□ 0.43
VARS-223ENST00000474643 SMCHD1A6NHR9 2005 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 LAMA4Q16363 1823 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 TLR3O15455 904 aaKnown RBP17.71■□□□□ 0.43
VARS-223ENST00000474643 DHX16O60231 1041 aaKnown RBP17.71■□□□□ 0.43
VARS-223ENST00000474643 ZEB2O60315 1214 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 ASGR1P07306 291 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 MUM1L1Q5H9M0 696 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 TTBK2Q6IQ55 1244 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 Q7L0L9 218 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 EEPD1Q7L9B9 569 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 RANBP17Q9H2T7 1088 aaKnown RBP17.71■□□□□ 0.43
VARS-223ENST00000474643 CYP39A1Q9NYL5 469 aa17.71■□□□□ 0.43
VARS-223ENST00000474643 NEDD4P46934 1319 aa17.71■□□□□ 0.42
VARS-223ENST00000474643 A0A0U1RQG5 324 aaPredicted RBP17.7■□□□□ 0.42
VARS-223ENST00000474643 MYADML2A6NDP7 307 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 PDHBP11177 359 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 NT5C2P49902 561 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 GJA9P57773 515 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 GPATCH4Q5T3I0 446 aaKnown RBP17.7■□□□□ 0.42
VARS-223ENST00000474643 SH3RF1Q7Z6J0 888 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 TLK2Q86UE8 772 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 FBXO16Q8IX29 292 aaPredicted RBP17.7■□□□□ 0.42
VARS-223ENST00000474643 KLHDC9Q8NEP7 349 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 UBAC1Q9BSL1 405 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 IL25Q9H293 177 aa17.7■□□□□ 0.42
VARS-223ENST00000474643 TRIM43BA6NCK2 446 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 SOWAHBA6NEL2 793 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 SGSM2O43147 1006 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 KDM4AO75164 1064 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 CALML3P27482 149 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 CST5P28325 142 aaPredicted RBP17.69■□□□□ 0.42
VARS-223ENST00000474643 FPGSQ05932 587 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 ZNF543Q08ER8 600 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 BAATQ14032 418 aaPredicted RBP17.69■□□□□ 0.42
VARS-223ENST00000474643 BTNL9Q6UXG8 535 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 TRIM43Q96BQ3 446 aaPredicted RBP17.69■□□□□ 0.42
VARS-223ENST00000474643 RNPC3Q96LT9 517 aaKnown RBP17.69■□□□□ 0.42
VARS-223ENST00000474643 FGD4Q96M96 766 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 CNNM2Q9H8M5 875 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 ELP1O95163 1332 aa17.69■□□□□ 0.42
VARS-223ENST00000474643 B4DLN1 442 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 NOVP48745 357 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 MRPL12P52815 198 aaKnown RBP17.68■□□□□ 0.42
VARS-223ENST00000474643 BEX3Q00994 111 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 PDE4DQ08499 809 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 SHHQ15465 462 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 USH1GQ495M9 461 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 ZNF697Q5TEC3 545 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 PNMA1Q8ND90 353 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 SLC17A8Q8NDX2 589 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 TOX2Q96NM4 488 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 KRT23Q9C075 422 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 UPF3AQ9H1J1 476 aaKnown RBP17.68■□□□□ 0.42
VARS-223ENST00000474643 VTA1Q9NP79 307 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 MCM3APO60318 1980 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 LTBP2Q14767 1821 aa17.68■□□□□ 0.42
VARS-223ENST00000474643 C11orf97A0A1B0GVM6 126 aaPredicted RBP17.67■□□□□ 0.42
VARS-223ENST00000474643 B4E1Z4 1266 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 NFIBO00712 420 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 KIAA0355O15063 1070 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 DYNC1LI2O43237 492 aaPredicted RBP17.67■□□□□ 0.42
VARS-223ENST00000474643 CDC45O75419 566 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 TRDNQ13061 729 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 FSCN1Q16658 493 aaKnown RBP17.67■□□□□ 0.42
VARS-223ENST00000474643 IQSEC1Q6DN90 963 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 RNF207Q6ZRF8 634 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 ANKRD33Q7Z3H0 272 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 DGKHQ86XP1 1220 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 FAM161BQ96MY7 647 aa17.67■□□□□ 0.42
VARS-223ENST00000474643 ZSCAN10Q96SZ4 725 aaPredicted RBP17.67■□□□□ 0.42
VARS-223ENST00000474643 U3KPZ7 1027 aaPredicted RBP17.67■□□□□ 0.42
VARS-223ENST00000474643 ADCY6O43306 1168 aa17.66■□□□□ 0.42
VARS-223ENST00000474643 CABYRO75952 493 aa17.66■□□□□ 0.42
VARS-223ENST00000474643 GOLGA8HP0CJ92 632 aa17.66■□□□□ 0.42
VARS-223ENST00000474643 PTH1RQ03431 593 aa17.66■□□□□ 0.42
VARS-223ENST00000474643 C9orf50Q5SZB4 431 aa17.66■□□□□ 0.42
VARS-223ENST00000474643 ESYT1Q9BSJ8 1104 aa17.66■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms