RNA–Protein interactions for RNA: ENST00000473214.1

RTF1-203, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene RTF1, Length 475 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-203ENST00000473214 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.05□□□□□ -1.28
RTF1-203ENST00000473214 LEO1Q8WVC0 666 aaPredicted RBP7.05□□□□□ -1.28
RTF1-203ENST00000473214 JARID2Q92833 1246 aaPredicted RBP7.05□□□□□ -1.28
RTF1-203ENST00000473214 ZNF496Q96IT1 587 aaPredicted RBP7.05□□□□□ -1.28
RTF1-203ENST00000473214 PNMA5Q96PV4 448 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 CRBNQ96SW2 442 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 TRIM56Q9BRZ2 755 aaKnown RBP7.05□□□□□ -1.28
RTF1-203ENST00000473214 PGAP2Q9UHJ9 254 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 RCAN3Q9UKA8 241 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 BCS1LQ9Y276 419 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 ZNF652Q9Y2D9 606 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 PCDHGB3Q9Y5G1 929 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 CTTNBP2Q8WZ74 1663 aa7.05□□□□□ -1.28
RTF1-203ENST00000473214 IQSEC2Q5JU85 1478 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 RAPGEF2Q9Y4G8 1499 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 UBAP1LF5GYI3 381 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 PMM2O15305 246 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 RFPL3O75679 317 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 DDAH1O94760 285 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 SETSIPP0DME0 302 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 GRNP28799 593 aaKnown RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 MAPK9P45984 424 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 GTF2A2P52657 109 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 GRM3Q14832 879 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 CCDC85BQ15834 202 aaPredicted RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 PCSK7Q16549 785 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 PRPF40BQ6NWY9 871 aaKnown RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 PNMA8AQ86V59 439 aaPredicted RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 NKAPQ8N5F7 415 aaKnown RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 GIMAP8Q8ND71 665 aaPredicted RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 POF1BQ8WVV4 589 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 WFDC12Q8WWY7 111 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 SLC7A3Q8WY07 619 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 TBC1D20Q96BZ9 403 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 TBATAQ96M53 351 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 SRCIN1Q9C0H9 1055 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 FRRS1LQ9P0K9 344 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 FRMD4AQ9P2Q2 1039 aaPredicted RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 LRFN2Q9ULH4 789 aa7.04□□□□□ -1.28
RTF1-203ENST00000473214 LUC7L2Q9Y383 392 aaKnown RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 SETD1BQ9UPS6 1966 aaKnown RBP7.04□□□□□ -1.28
RTF1-203ENST00000473214 SYNRGQ9UMZ2 1314 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 NCOA1Q15788 1441 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 UHRF1BP1Q6BDS2 1440 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 ABHD14A-ACY1A0A1B0GW23 586 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 TGFBR3LH3BV60 316 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 K7ENM7 598 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 GPR39O43194 453 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 MICAL2O94851 1124 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 MAP3K6O95382 1288 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 ZAP70P43403 619 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 GIPRP48546 466 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 GJA9P57773 515 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 KIF22Q14807 665 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 RTN1Q16799 776 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 ARHGAP29Q52LW3 1261 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 FAM180BQ6P0A1 224 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 C1orf122Q6ZSJ8 110 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 FAM35AQ86V20 835 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 FAM186BQ8IYM0 893 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 LSM14AQ8ND56 463 aaKnown RBP7.03□□□□□ -1.28
RTF1-203ENST00000473214 ST13P5Q8NFI4 369 aaPredicted RBP7.03□□□□□ -1.28
RTF1-203ENST00000473214 TTC17Q96AE7 1141 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 NGLY1Q96IV0 654 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 SLC26A8Q96RN1 970 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 NELL2Q99435 816 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 LPIN3Q9BQK8 851 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 RUSC1Q9BVN2 902 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 TNKS2Q9H2K2 1166 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 SMC4Q9NTJ3 1288 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 KLHL11Q9NVR0 708 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.03□□□□□ -1.28
RTF1-203ENST00000473214 SPEF1Q9Y4P9 236 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 C3P01024 1663 aa7.03□□□□□ -1.28
RTF1-203ENST00000473214 FRMPD2Q68DX3 1309 aaPredicted RBP7.02□□□□□ -1.28
RTF1-203ENST00000473214 POGZQ7Z3K3 1410 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 EFCAB5A4FU69 1503 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 GTPBP10A4D1E9 387 aaKnown RBP7.02□□□□□ -1.29
RTF1-203ENST00000473214 A6NHS1 94 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 SMTNL1A8MU46 457 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 GABRDO14764 452 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 PAX4O43316 350 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 NOS3P29474 1203 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 HOXC13P31276 330 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 IREB2P48200 963 aaKnown RBP7.02□□□□□ -1.29
RTF1-203ENST00000473214 RXRGP48443 463 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 MTA1Q13330 715 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 TRIM14Q14142 442 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 GBX1Q14549 363 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 STAT4Q14765 748 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 MAP3K11Q16584 847 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 SNAP47Q5SQN1 464 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 OTOP3Q7RTS5 596 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 FLCNQ8NFG4 579 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 TTC9Q92623 222 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 TRIM63Q969Q1 353 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 CLIP3Q96DZ5 547 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 FERD3LQ96RJ6 166 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 BCO2Q9BYV7 579 aa7.02□□□□□ -1.29
RTF1-203ENST00000473214 TRIM8Q9BZR9 551 aa7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms