RNA–Protein interactions for RNA: ENST00000472585.1

VCL-204, Transcript of vinculin, humanhuman

TSL 2

Gene VCL, Length 556 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-204ENST00000472585 FAM126BQ8IXS8 530 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 RPAP2Q8IXW5 612 aaPredicted RBP11.19□□□□□ -0.62
VCL-204ENST00000472585 CPXCR1Q8N123 301 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 MSL3Q8N5Y2 521 aaKnown RBP11.19□□□□□ -0.62
VCL-204ENST00000472585 TEX13BQ9BXU2 312 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 UPF3AQ9H1J1 476 aaKnown RBP11.19□□□□□ -0.62
VCL-204ENST00000472585 GOPCQ9HD26 462 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.19□□□□□ -0.62
VCL-204ENST00000472585 NYAP2Q9P242 653 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 SLC4A7Q9Y6M7 1214 aa11.19□□□□□ -0.62
VCL-204ENST00000472585 BAZ2AQ9UIF9 1905 aaKnown RBP11.19□□□□□ -0.62
VCL-204ENST00000472585 LRRC37A2A6NM11 1700 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 ZBBXA8MT70 800 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 RBAK-RBAKDNI3L0D1 243 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 ATMINO43313 823 aaPredicted RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 SMARCA5O60264 1052 aaPredicted RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 COPB2P35606 906 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 RABGGTBP53611 331 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 NKX3-2P78367 333 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 BEX3Q00994 111 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 SBK1Q52WX2 424 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 ASTLQ6HA08 431 aaPredicted RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.18□□□□□ -0.62
VCL-204ENST00000472585 RPUSD2Q8IZ73 545 aaKnown RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 SLC43A3Q8NBI5 491 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 OSBP2Q969R2 916 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 DDX11Q96FC9 970 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 SLC38A10Q9HBR0 1119 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 EPB41L4AQ9HCS5 686 aaPredicted RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 BMP2KQ9NSY1 1161 aaPredicted RBP11.18□□□□□ -0.62
VCL-204ENST00000472585 CLIP2Q9UDT6 1046 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 PCDHA11Q9Y5I1 949 aa11.18□□□□□ -0.62
VCL-204ENST00000472585 SOWAHBA6NEL2 793 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 FAM86C2PA6NEL3 165 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 RAB11FIP3O75154 756 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 PRDM1O75626 825 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 HNRNPUQ00839 825 aaKnown RBP eCLIP11.17□□□□□ -0.62
VCL-204ENST00000472585 GNASQ5JWF2 1037 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 ARMCX2Q7L311 632 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 CCDC144CPQ8IYA2 1237 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 PRPF38AQ8NAV1 312 aaKnown RBP11.17□□□□□ -0.62
VCL-204ENST00000472585 HLA-CQ95604 372 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 MKL1Q969V6 931 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 HIPK3Q9H422 1215 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 COG6Q9Y2V7 657 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 MCM3APO60318 1980 aa11.17□□□□□ -0.62
VCL-204ENST00000472585 ZNF536O15090 1300 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 TTLL13PA6NNM8 815 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 TLL1O43897 1013 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 MYOGP15173 224 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 CCL23P55773 120 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 TMEM67Q5HYA8 995 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 CXCL17Q6UXB2 119 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 FAM133AQ8N9E0 248 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 KIFC2Q96AC6 838 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 CEP95Q96GE4 821 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 PURBQ96QR8 312 aaKnown RBP11.16□□□□□ -0.62
VCL-204ENST00000472585 ABHD16BQ9H3Z7 469 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 PDGFCQ9NRA1 345 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 GNEQ9Y223 722 aaKnown RBP11.16□□□□□ -0.62
VCL-204ENST00000472585 MTCH2Q9Y6C9 303 aa11.16□□□□□ -0.62
VCL-204ENST00000472585 GREB1LQ9C091 1923 aaPredicted RBP11.15□□□□□ -0.62
VCL-204ENST00000472585 MINDY4BA8MYZ0 360 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 RFXAPO00287 272 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 ZBED4O75132 1171 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 ATP2A2P16615 1042 aaKnown RBP11.15□□□□□ -0.62
VCL-204ENST00000472585 SMPD1P17405 629 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 POU3F3P20264 500 aaPredicted RBP11.15□□□□□ -0.62
VCL-204ENST00000472585 MRE11P49959 708 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 SNAP25P60880 206 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 TSHZ3Q63HK5 1081 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 ANKRD35Q8N283 1001 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 CHMP4CQ96CF2 233 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 AGBL1Q96MI9 1066 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.15□□□□□ -0.627e-14■■□□□ 14.2
VCL-204ENST00000472585 TRPV6Q9H1D0 765 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 WNT8AQ9H1J5 351 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 CERS4Q9HA82 394 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 MTMR4Q9NYA4 1195 aa11.15□□□□□ -0.62
VCL-204ENST00000472585 ARPP21Q9UBL0 812 aaPredicted RBP11.15□□□□□ -0.62
VCL-204ENST00000472585 BRWD1Q9NSI6 2320 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 PI4K2BG5E9Z4 385 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 M0R2C6 588 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 PSMC6P62333 389 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 TAPT1Q6NXT6 567 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 NOL8Q76FK4 1167 aaKnown RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 RASGRP2Q7LDG7 609 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 LRRC47Q8N1G4 583 aaKnown RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 CHST13Q8NET6 341 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 SNX27Q96L92 541 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 UIMC1Q96RL1 719 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 SEC62Q99442 399 aaKnown RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 NOC4LQ9BVI4 516 aaKnown RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 MKNK2Q9HBH9 465 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 C11orf16Q9NQ32 467 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 A1CFQ9NQ94 594 aaKnown RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 INCENPQ9NQS7 918 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 HOMER2Q9NSB8 354 aa11.14□□□□□ -0.63
VCL-204ENST00000472585 CTDP1Q9Y5B0 961 aaPredicted RBP11.14□□□□□ -0.63
VCL-204ENST00000472585 PRR33A8MZF0 331 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms