RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 ATG4DQ86TL0 474 aaPredicted RBP6.24□□□□□ -1.41
VPS13A-210ENST00000471439 RNF141Q8WVD5 230 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 FAM168AQ92567 244 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 PREX2Q70Z35 1606 aa6.24□□□□□ -1.41
VPS13A-210ENST00000471439 DNAJC25-GNG10A0A024R161 153 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 JUNBP17275 347 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-210ENST00000471439 TPP2P29144 1249 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-210ENST00000471439 USP48Q86UV5 1035 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 KIAA0825Q8IV33 1275 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 FLAD1Q8NFF5 587 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 ZNF512BQ96KM6 892 aaPredicted RBP6.23□□□□□ -1.41
VPS13A-210ENST00000471439 CCDC74BQ96LY2 380 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 SPON2Q9BUD6 331 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 ACBD3Q9H3P7 528 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 SLAMF8Q9P0V8 285 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 LAMC1P11047 1609 aa6.23□□□□□ -1.41
VPS13A-210ENST00000471439 FAM86C2PA6NEL3 165 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 KIF3BO15066 747 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 SRFP11831 508 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 RAG1P15918 1043 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 MCM4P33991 863 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 ERVFC1P60507 584 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 SNW1Q13573 536 aaKnown RBP6.22□□□□□ -1.41
VPS13A-210ENST00000471439 GAB4Q2WGN9 574 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 DIEXFQ68CQ4 756 aaKnown RBP6.22□□□□□ -1.41
VPS13A-210ENST00000471439 CREG2Q8IUH2 290 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 PIWIL2Q8TC59 973 aaKnown RBP6.22□□□□□ -1.41
VPS13A-210ENST00000471439 COX4I2Q96KJ9 171 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.22□□□□□ -1.41
VPS13A-210ENST00000471439 GMIPQ9P107 970 aa6.22□□□□□ -1.41
VPS13A-210ENST00000471439 DDX41Q9UJV9 622 aaKnown RBP6.22□□□□□ -1.41
VPS13A-210ENST00000471439 PIK3C2BO00750 1634 aa6.21□□□□□ -1.41
VPS13A-210ENST00000471439 SYCP2Q9BX26 1530 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.21□□□□□ -1.42
VPS13A-210ENST00000471439 FOXN1O15353 648 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 ATE1O95260 518 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 NKD1Q969G9 470 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 VWCEQ96DN2 955 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 ATG4CQ96DT6 458 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 ASIC4Q96FT7 647 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 ALPK1Q96QP1 1244 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 NT5C1AQ9BXI3 368 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 GPR62Q9BZJ7 368 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 EHMT1Q9H9B1 1298 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 LMCD1Q9NZU5 365 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 PCDHA11Q9Y5I1 949 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 DCCP43146 1447 aa6.21□□□□□ -1.42
VPS13A-210ENST00000471439 ROBO2Q9HCK4 1378 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 ARHGEF28Q8N1W1 1705 aaKnown RBP6.2□□□□□ -1.42
VPS13A-210ENST00000471439 ZNF503-AS2A6NEH8 195 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 RGS13O14921 159 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 GBP1P32455 592 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 NLRC3Q7RTR2 1065 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 SLITRK4Q8IW52 837 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 MTFR1LQ9H019 292 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 DUSP13Q9UII6 198 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 MINPP1Q9UNW1 487 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.2□□□□□ -1.42
VPS13A-210ENST00000471439 PLCH1Q4KWH8 1693 aa6.2□□□□□ -1.42
VPS13A-210ENST00000471439 ABCC5O15440 1437 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 USP32Q8NFA0 1604 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 BIN1O00499 593 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 HK2P52789 917 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 EGR3Q06889 387 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 ZNF648Q5T619 568 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-210ENST00000471439 TMC3Q7Z5M5 1100 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 TSPYL5Q86VY4 417 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-210ENST00000471439 ZSWIM9Q86XI8 627 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 NLGN2Q8NFZ4 835 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 TMEM40Q8WWA1 233 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 LIN37Q96GY3 246 aaPredicted RBP6.19□□□□□ -1.42
VPS13A-210ENST00000471439 TINF2Q9BSI4 451 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 ASPNQ9BXN1 380 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 TGIF2Q9GZN2 237 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 ADAMTS10Q9H324 1103 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 CNNM2Q9H8M5 875 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 PPT2Q9UMR5 302 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 NWD2Q9ULI1 1742 aa6.19□□□□□ -1.42
VPS13A-210ENST00000471439 DHX29Q7Z478 1369 aaKnown RBP6.18□□□□□ -1.42
VPS13A-210ENST00000471439 NME1P15531 152 aaKnown RBP6.18□□□□□ -1.42
VPS13A-210ENST00000471439 TRHRP34981 398 aaPredicted RBP6.18□□□□□ -1.42
VPS13A-210ENST00000471439 CDCP2Q5VXM1 449 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 TMPRSS7Q7RTY8 843 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 TTC6Q86TZ1 520 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 TMEM192Q8IY95 271 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 CCSER2Q9H7U1 834 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 GPATCH2Q9NW75 528 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 EBF1Q9UH73 591 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 KCNH3Q9ULD8 1083 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 ADGRB3O60242 1522 aa6.18□□□□□ -1.42
VPS13A-210ENST00000471439 DHX57Q6P158 1386 aaKnown RBP6.18□□□□□ -1.42
VPS13A-210ENST00000471439 CDC42BPAQ5VT25 1732 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 BTBD11A6QL63 1104 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 MEIS3P2A8K0S8 358 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 ACRP10323 421 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 ZNF165P49910 485 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 KCNMB1Q16558 191 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 TIGD5Q53EQ6 642 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 NAALADL2Q58DX5 795 aa6.17□□□□□ -1.42
VPS13A-210ENST00000471439 NBPF12Q5TAG4 269 aaPredicted RBP6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms