RNA–Protein interactions for RNA: ENST00000469223.5

HDAC6-217, Transcript of histone deacetylase 6, humanhuman

TSL 5

Gene HDAC6, Length 796 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-217ENST00000469223 C19orf67A6NJJ6 358 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 RAD21O60216 631 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 RFC2P35250 354 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 DNAH14Q0VDD8 3507 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 FAM83BQ5T0W9 1011 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 ADHFE1Q8IWW8 467 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 DBNDD2Q9BQY9 259 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 AP5M1Q9H0R1 490 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 PRKAG3Q9UGI9 489 aa15.3■□□□□ 0.04
HDAC6-217ENST00000469223 ACACBO00763 2458 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 COL4A6Q14031 1691 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 BAIAP3O94812 1187 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 CYP2D6P10635 497 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 WDR5P61964 334 aaKnown RBP15.29■□□□□ 0.04
HDAC6-217ENST00000469223 TGS1Q96RS0 853 aaKnown RBP15.29■□□□□ 0.04
HDAC6-217ENST00000469223 ZBED2Q9BTP6 218 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 GNEQ9Y223 722 aaKnown RBP15.29■□□□□ 0.04
HDAC6-217ENST00000469223 FAM50BQ9Y247 325 aa15.29■□□□□ 0.04
HDAC6-217ENST00000469223 ZEB2O60315 1214 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 ERVK-21P61565 698 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 DEFB103AP81534 67 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 HERC4Q5GLZ8 1057 aaPredicted RBP15.28■□□□□ 0.04
HDAC6-217ENST00000469223 CCDC158Q5M9N0 1113 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 EP400NLQ6ZTU2 488 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 ANKRD35Q8N283 1001 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 PRRX2Q99811 253 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 UPF3BQ9BZI7 483 aaKnown RBP15.28■□□□□ 0.04
HDAC6-217ENST00000469223 MCM9Q9NXL9 1143 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 HDAC5Q9UQL6 1122 aa15.28■□□□□ 0.04
HDAC6-217ENST00000469223 LINC01553A4QN01 128 aa15.27■□□□□ 0.04
HDAC6-217ENST00000469223 DYNC1LI2O43237 492 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 SUPT20HL2P0C7V6 817 aa15.27■□□□□ 0.04
HDAC6-217ENST00000469223 SUGP1Q8IWZ8 645 aaKnown RBP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 DYNLL2Q96FJ2 89 aa15.27■□□□□ 0.04
HDAC6-217ENST00000469223 YTHDC1Q96MU7 727 aaKnown RBP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 NUP88Q99567 741 aaPredicted RBP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 SLF1Q9BQI6 1058 aa15.27■□□□□ 0.04
HDAC6-217ENST00000469223 DDX49Q9Y6V7 483 aaKnown RBP15.27■□□□□ 0.04
HDAC6-217ENST00000469223 FRYLO94915 3013 aa15.27■□□□□ 0.03
HDAC6-217ENST00000469223 RALGAPA2Q2PPJ7 1873 aa15.27■□□□□ 0.03
HDAC6-217ENST00000469223 IGSF3O75054 1194 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 IQCF3P0C7M6 154 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 EEF2P13639 858 aaKnown RBP15.26■□□□□ 0.03
HDAC6-217ENST00000469223 SMPD1P17405 629 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 CNTN2Q02246 1040 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 MTX1Q13505 466 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 ERMP1Q7Z2K6 904 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 CPXCR1Q8N123 301 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 FBXO22Q8NEZ5 403 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 PPP1R13LQ8WUF5 828 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 PBXIP1Q96AQ6 731 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 RIOK1Q9BRS2 568 aaKnown RBP15.26■□□□□ 0.03
HDAC6-217ENST00000469223 GOPCQ9HD26 462 aa15.26■□□□□ 0.03
HDAC6-217ENST00000469223 ZFHX4Q86UP3 3567 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 TMEM221A6NGB7 291 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 M0R296 226 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 PITPNM1O00562 1244 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 TIGD5Q53EQ6 642 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 TNNI3KQ59H18 835 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 FAM47CQ5HY64 1035 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 TMEM63BQ5T3F8 832 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.25■□□□□ 0.03
HDAC6-217ENST00000469223 RNF135Q8IUD6 432 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 ATOH1Q92858 354 aaPredicted RBP15.25■□□□□ 0.03
HDAC6-217ENST00000469223 ALG13Q9NP73 1137 aaKnown RBP15.25■□□□□ 0.03
HDAC6-217ENST00000469223 SWAP70Q9UH65 585 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 FPGT-TNNI3KV9GXZ4 949 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 EP300Q09472 2414 aaPredicted RBP15.25■□□□□ 0.03
HDAC6-217ENST00000469223 CEP250Q9BV73 2442 aa15.25■□□□□ 0.03
HDAC6-217ENST00000469223 SOWAHBA6NEL2 793 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 GJB5O95377 273 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 G3BP1Q13283 466 aaKnown RBP eCLIP15.24■□□□□ 0.038e-6■□□□□ 9
HDAC6-217ENST00000469223 BMP8AQ7Z5Y6 402 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 FBXO16Q8IX29 292 aaPredicted RBP15.24■□□□□ 0.03
HDAC6-217ENST00000469223 RETREG2Q8NC44 543 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 EDAQ92838 391 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 PABPC5Q96DU9 382 aaKnown RBP15.24■□□□□ 0.03
HDAC6-217ENST00000469223 MRPL38Q96DV4 380 aaKnown RBP15.24■□□□□ 0.03
HDAC6-217ENST00000469223 CRBNQ96SW2 442 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 C17orf80Q9BSJ5 609 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 HOMER2Q9NSB8 354 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 SMC4Q9NTJ3 1288 aa15.24■□□□□ 0.03
HDAC6-217ENST00000469223 CLUL1Q15846 466 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 TCEAL5Q5H9L2 206 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 FAM117BQ6P1L5 589 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 SDR42E1Q8WUS8 393 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 POP1Q99575 1024 aaKnown RBP15.23■□□□□ 0.03
HDAC6-217ENST00000469223 RAD9AQ99638 391 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 CRNKL1Q9BZJ0 848 aaKnown RBP15.23■□□□□ 0.03
HDAC6-217ENST00000469223 RAVER2Q9HCJ3 691 aaKnown RBP15.23■□□□□ 0.03
HDAC6-217ENST00000469223 PDGFCQ9NRA1 345 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 CLDND1Q9NY35 253 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 TLR7Q9NYK1 1049 aaKnown RBP15.23■□□□□ 0.03
HDAC6-217ENST00000469223 CHD8Q9HCK8 2581 aa15.23■□□□□ 0.03
HDAC6-217ENST00000469223 MAGEB6P1A0A0J9YX57 407 aa15.22■□□□□ 0.03
HDAC6-217ENST00000469223 RBAK-RBAKDNI3L0D1 243 aa15.22■□□□□ 0.03
HDAC6-217ENST00000469223 VCPP55072 806 aaKnown RBP15.22■□□□□ 0.03
HDAC6-217ENST00000469223 TRIM67Q6ZTA4 783 aa15.22■□□□□ 0.03
HDAC6-217ENST00000469223 EEPD1Q7L9B9 569 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms