RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 LRRC37A2A6NM11 1700 aa19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 MYADML2A6NDP7 307 aa19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 C6orf222P0C671 652 aaPredicted RBP19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 GJA9P57773 515 aa19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 SYDE2Q5VT97 1194 aa19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 PCSK9Q8NBP7 692 aaKnown RBP19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 CYP39A1Q9NYL5 469 aa19.52■□□□□ 0.72
CCDC28B-204ENST00000469003 HIP1O00291 1037 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 KIAA0355O15063 1070 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 PQBP1O60828 265 aaKnown RBP19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 SLC16A2P36021 539 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 ANKRD33Q7Z3H0 272 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 TOX2Q96NM4 488 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 DIAPH3Q9NSV4 1193 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 LCTP09848 1927 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 ELP1O95163 1332 aa19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 FRMPD2Q68DX3 1309 aaPredicted RBP19.51■□□□□ 0.71
CCDC28B-204ENST00000469003 ZNF213O14771 459 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 ASGR1P07306 291 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 PDHBP11177 359 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 NT5C2P49902 561 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 NKX3-2P78367 333 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 IRX5P78411 483 aaPredicted RBP19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 SHHQ15465 462 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 CWC27Q6UX04 472 aaKnown RBP19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 NSMFQ6X4W1 530 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 ESR2Q92731 530 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 GLT1D1Q96MS3 346 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 GPCPD1Q9NPB8 672 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 ASTN1O14525 1302 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 NEDD4P46934 1319 aa19.5■□□□□ 0.71
CCDC28B-204ENST00000469003 LAMA2P24043 3122 aaKnown RBP19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 DCDC2CA8MYV0 355 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 ITGB8P26012 769 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 TNFAIP2Q03169 654 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 GNASQ5JWF2 1037 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 FAM109BQ6ICB4 259 aaPredicted RBP19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 TMEM39AQ9NV64 488 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 MROH7Q68CQ1 1323 aa19.49■□□□□ 0.71
CCDC28B-204ENST00000469003 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 CTAGE5O15320 804 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 SNHG28P0DPA3 235 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 RAG1P15918 1043 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 ZNF543Q08ER8 600 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 FAAP100Q0VG06 881 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 C9orf50Q5SZB4 431 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 PNMA2Q9UL42 364 aa19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 GNEQ9Y223 722 aaKnown RBP19.48■□□□□ 0.71
CCDC28B-204ENST00000469003 CDK7P50613 346 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 CCDC178Q5BJE1 867 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 NOL8Q76FK4 1167 aaKnown RBP19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 DGKHQ86XP1 1220 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 MORC4Q8TE76 937 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 VTI1AQ96AJ9 217 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 DSCC1Q9BVC3 393 aa19.47■□□□□ 0.71
CCDC28B-204ENST00000469003 A0A0U1RQG5 324 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 NFIBO00712 420 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 BAATQ14032 418 aaPredicted RBP19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 IQSEC1Q6DN90 963 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 TAPT1Q6NXT6 567 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 TLK2Q86UE8 772 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 PURBQ96QR8 312 aaKnown RBP19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 ZKSCAN3Q9BRR0 538 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 VTA1Q9NP79 307 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 ADD3Q9UEY8 706 aaKnown RBP19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 DDX49Q9Y6V7 483 aaKnown RBP19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 VCANP13611 3396 aa19.46■□□□□ 0.71
CCDC28B-204ENST00000469003 LOC102724159A0A0B4J2E5 919 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 ARVCFO00192 962 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 KDM4AO75164 1064 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 SMPD1P17405 629 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 BEX3Q00994 111 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 PWP2Q15269 919 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 GPATCH4Q5T3I0 446 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 IQCA1Q86XH1 822 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 FBXO16Q8IX29 292 aaPredicted RBP19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 CLEC4DQ8WXI8 215 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 AP5M1Q9H0R1 490 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 PDGFCQ9NRA1 345 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 CTNNA3Q9UI47 895 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 TBX21Q9UL17 535 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 Q9Y3F1 56 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 SUPT16HQ9Y5B9 1047 aaKnown RBP19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 WDR19Q8NEZ3 1342 aa19.45■□□□□ 0.7
CCDC28B-204ENST00000469003 PTPDC1A2A3K4 754 aa19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 ALDH5A1P51649 535 aaPredicted RBP19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 FPGSQ05932 587 aa19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 IMMTQ16891 758 aaKnown RBP19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 EEPD1Q7L9B9 569 aa19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 ANKS1AQ92625 1134 aa19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 FAM161BQ96MY7 647 aa19.44■□□□□ 0.7
CCDC28B-204ENST00000469003 B4E1Z4 1266 aa19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 DYNC1LI2O43237 492 aaPredicted RBP19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 CABYRO75952 493 aa19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 TIMP1P01033 207 aa19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 EPHB4P54760 987 aa19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 FSCN1Q16658 493 aaKnown RBP19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 PNMA1Q8ND90 353 aa19.43■□□□□ 0.7
CCDC28B-204ENST00000469003 GUCD1Q96NT3 240 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms