RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 TMEM60Q9H2L4 133 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 PIM2Q9P1W9 311 aa8.61□□□□□ -1.03
COL6A3-208ENST00000468792 LTBP3Q9NS15 1303 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 A0A087WWV3 80 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 PPP1R3GB7ZBB8 358 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 F5H6K3 240 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 PSMD14O00487 310 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 MPHOSPH10O00566 681 aaKnown RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 NRDCO43847 1150 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 FOSP01100 380 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 RPS12P25398 132 aaKnown RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 SLC1A4P43007 532 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 UBASH3AP57075 661 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 AMPD3Q01432 767 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 ICA1Q05084 483 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 KLRC3Q07444 240 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 DLGAP5Q15398 846 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 CCDC144BQ3MJ40 725 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 NAALADL2Q58DX5 795 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 ZNF658Q5TYW1 1059 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 CDKAL1Q5VV42 579 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 RRAGBQ5VZM2 374 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 FOXR2Q6PJQ5 311 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 HOMER1Q86YM7 354 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 VSTM4Q8IW00 320 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 LARGE2Q8N3Y3 721 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 CCDC112Q8NEF3 446 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 RASGRP4Q8TDF6 673 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 CACTINQ8WUQ7 758 aaKnown RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 PRIMPOLQ96LW4 560 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 ZNF830Q96NB3 372 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 MTRQ99707 1265 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 C7orf25Q9BPX7 421 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 LRRC27Q9C0I9 530 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 TDRD3Q9H7E2 651 aaKnown RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 VAT1LQ9HCJ6 419 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 FANCLQ9NW38 375 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 IFNKQ9P0W0 207 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 ZNF70Q9UC06 446 aaPredicted RBP8.6□□□□□ -1.03
COL6A3-208ENST00000468792 STK17AQ9UEE5 414 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 NRBP1Q9UHY1 535 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 RWDD2AQ9UIY3 292 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 NFE2L3Q9Y4A8 694 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 STK24Q9Y6E0 443 aa8.6□□□□□ -1.03
COL6A3-208ENST00000468792 FRMPD2Q68DX3 1309 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 A0A1B0GTH6 734 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PIK3CDO00329 1044 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 TBX3O15119 743 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 EDIL3O43854 480 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 CCNT1O60563 726 aaKnown RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PPP1R11O60927 126 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 RHOBTB3O94955 611 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 RPN1P04843 607 aaKnown RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 TPM2P07951 284 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 LMOD1P29536 600 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 STAT6P42226 847 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 ZNF280AP59817 542 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 FMR1Q06787 632 aaKnown RBP eCLIP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 SPAG1Q07617 926 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 TCP10Q12799 353 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 NR1I3Q14994 352 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 SEPT2Q15019 361 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 TMEM266Q2M3C6 531 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 LETM2Q2VYF4 491 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 HYIQ5T013 277 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 CABP7Q86V35 215 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 ZSCAN29Q8IWY8 852 aaPredicted RBP8.59□□□□□ -1.03
COL6A3-208ENST00000468792 NIM1KQ8IY84 436 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 CRYGNQ8WXF5 182 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 MED15Q96RN5 788 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 CSRNP1Q96S65 589 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 AMNQ9BXJ7 453 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 MTFR1LQ9H019 292 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 DEFB129Q9H1M3 183 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 CPVLQ9H3G5 476 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PSTPIP2Q9H939 334 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 GPCPD1Q9NPB8 672 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PGAP2Q9UHJ9 254 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PYCARDQ9ULZ3 195 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 TMX2Q9Y320 296 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 PCDHAC2Q9Y5I4 1007 aa8.59□□□□□ -1.03
COL6A3-208ENST00000468792 USP17L10C9JJH3 530 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 H7C1D1 291 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 KIF2AO00139 706 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 NDUFB10O96000 172 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 SERPINC1P01008 464 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 BMP3P12645 472 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 ATP1A3P13637 1013 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 POLD1P28340 1107 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 AFMP43652 599 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CACNB3P54284 484 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CCZ1BP86790 482 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CCZ1P86791 482 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 TBX2Q13207 712 aaPredicted RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 TNIP1Q15025 636 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CALCRLQ16602 461 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 CCDC96Q2M329 555 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 QRICH1Q2TAL8 776 aa8.58□□□□□ -1.04
COL6A3-208ENST00000468792 DALRD3Q5D0E6 543 aaKnown RBP8.58□□□□□ -1.04
COL6A3-208ENST00000468792 JAKMIP3Q5VZ66 844 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms