RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ZKSCAN3Q9BRR0 538 aa20.58■□□□□ 0.89
COL7A1-206ENST00000466591 TLR3O15455 904 aaKnown RBP20.57■□□□□ 0.88
COL7A1-206ENST00000466591 DHX16O60231 1041 aaKnown RBP20.57■□□□□ 0.88
COL7A1-206ENST00000466591 ZEB2O60315 1214 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 ASGR1P07306 291 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 MUM1L1Q5H9M0 696 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 TBC1D10CQ8IV04 446 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 SLC17A8Q8NDX2 589 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 RANBP17Q9H2T7 1088 aaKnown RBP20.57■□□□□ 0.88
COL7A1-206ENST00000466591 OSBPL3Q9H4L5 887 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 KAT14Q9H8E8 782 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 CYP39A1Q9NYL5 469 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 CTNNA3Q9UI47 895 aa20.57■□□□□ 0.88
COL7A1-206ENST00000466591 SUPT16HQ9Y5B9 1047 aaKnown RBP20.57■□□□□ 0.88
COL7A1-206ENST00000466591 TRIM43BA6NCK2 446 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 MYADML2A6NDP7 307 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 SOWAHBA6NEL2 793 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 CALML3P27482 149 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 ZNF697Q5TEC3 545 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 KLHDC9Q8NEP7 349 aa20.56■□□□□ 0.88
COL7A1-206ENST00000466591 TRIM43Q96BQ3 446 aaPredicted RBP20.56■□□□□ 0.88
COL7A1-206ENST00000466591 ELP1O95163 1332 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 A0A0U1RQG5 324 aaPredicted RBP20.55■□□□□ 0.88
COL7A1-206ENST00000466591 PDHBP11177 359 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 CST5P28325 142 aaPredicted RBP20.55■□□□□ 0.88
COL7A1-206ENST00000466591 GJA9P57773 515 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 FPGSQ05932 587 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 SHHQ15465 462 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 TLK2Q86UE8 772 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 FBXO16Q8IX29 292 aaPredicted RBP20.55■□□□□ 0.88
COL7A1-206ENST00000466591 RNPC3Q96LT9 517 aaKnown RBP20.55■□□□□ 0.88
COL7A1-206ENST00000466591 FGD4Q96M96 766 aa20.55■□□□□ 0.88
COL7A1-206ENST00000466591 NEDD4P46934 1319 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 KDM4AO75164 1064 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 NT5C2P49902 561 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 BEX3Q00994 111 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 ZNF543Q08ER8 600 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 BAATQ14032 418 aaPredicted RBP20.54■□□□□ 0.88
COL7A1-206ENST00000466591 GPATCH4Q5T3I0 446 aaKnown RBP20.54■□□□□ 0.88
COL7A1-206ENST00000466591 BTNL9Q6UXG8 535 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 RNF207Q6ZRF8 634 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 KIAA1211Q6ZU35 1233 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 FAM161BQ96MY7 647 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 TOX2Q96NM4 488 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 UBAC1Q9BSL1 405 aa20.54■□□□□ 0.88
COL7A1-206ENST00000466591 LTBP2Q14767 1821 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 B4DLN1 442 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 B4E1Z4 1266 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 KIAA0355O15063 1070 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 DYNC1LI2O43237 492 aaPredicted RBP20.53■□□□□ 0.88
COL7A1-206ENST00000466591 NOVP48745 357 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 MRPL12P52815 198 aaKnown RBP20.53■□□□□ 0.88
COL7A1-206ENST00000466591 PDE4DQ08499 809 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 FSCN1Q16658 493 aaKnown RBP20.53■□□□□ 0.88
COL7A1-206ENST00000466591 USH1GQ495M9 461 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 ANKRD33Q7Z3H0 272 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 KRT23Q9C075 422 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 UPF3AQ9H1J1 476 aaKnown RBP20.53■□□□□ 0.88
COL7A1-206ENST00000466591 VTA1Q9NP79 307 aa20.53■□□□□ 0.88
COL7A1-206ENST00000466591 MCM3APO60318 1980 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.52■□□□□ 0.88
COL7A1-206ENST00000466591 NFIBO00712 420 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 ADCY6O43306 1168 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 GOLGA8HP0CJ92 632 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 C9orf50Q5SZB4 431 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 IQSEC1Q6DN90 963 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 DGKHQ86XP1 1220 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 PNMA1Q8ND90 353 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 DSCC1Q9BVC3 393 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 CNNM2Q9H8M5 875 aa20.52■□□□□ 0.88
COL7A1-206ENST00000466591 ARVCFO00192 962 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 CABYRO75952 493 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 ALDH5A1P51649 535 aaPredicted RBP20.51■□□□□ 0.87
COL7A1-206ENST00000466591 IRX5P78411 483 aaPredicted RBP20.51■□□□□ 0.87
COL7A1-206ENST00000466591 FAAP100Q0VG06 881 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 TRDNQ13061 729 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 BRDTQ58F21 947 aaPredicted RBP20.51■□□□□ 0.87
COL7A1-206ENST00000466591 CXCL17Q6UXB2 119 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 RUFY2Q8WXA3 655 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 ZSCAN10Q96SZ4 725 aaPredicted RBP20.51■□□□□ 0.87
COL7A1-206ENST00000466591 GPHNQ9NQX3 736 aaPredicted RBP20.51■□□□□ 0.87
COL7A1-206ENST00000466591 MTMR10Q9NXD2 777 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 STXBP5LQ9Y2K9 1186 aa20.51■□□□□ 0.87
COL7A1-206ENST00000466591 SZT2Q5T011 3432 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 SMPD1P17405 629 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 CCSAPQ6IQ19 270 aaPredicted RBP20.5■□□□□ 0.87
COL7A1-206ENST00000466591 TMEM199Q8N511 208 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 PURBQ96QR8 312 aaKnown RBP20.5■□□□□ 0.87
COL7A1-206ENST00000466591 PPP1R12CQ9BZL4 782 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 KATNBL1Q9H079 304 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 PDGFCQ9NRA1 345 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 DDX49Q9Y6V7 483 aaKnown RBP20.5■□□□□ 0.87
COL7A1-206ENST00000466591 RAD50Q92878 1312 aa20.5■□□□□ 0.87
COL7A1-206ENST00000466591 TIMP1P01033 207 aa20.49■□□□□ 0.87
COL7A1-206ENST00000466591 PARP1P09874 1014 aaKnown RBP20.49■□□□□ 0.87
COL7A1-206ENST00000466591 IRX6P78412 446 aaPredicted RBP20.49■□□□□ 0.87
COL7A1-206ENST00000466591 ASPRV1Q53RT3 343 aa20.49■□□□□ 0.87
COL7A1-206ENST00000466591 SLC30A10Q6XR72 485 aa20.49■□□□□ 0.87
COL7A1-206ENST00000466591 UBA5Q9GZZ9 404 aa20.49■□□□□ 0.87
COL7A1-206ENST00000466591 WDR19Q8NEZ3 1342 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms