RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 GOLGA8AA7E2F4 631 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 FLOT1O75955 427 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 DSG3P32926 999 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 GNAQP50148 359 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 NBR1Q14596 966 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 RTN1Q16799 776 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 KLHL40Q2TBA0 621 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 FBXO18Q8NFZ0 1043 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 RNF26Q9BY78 433 aaPredicted RBP13.62□□□□□ -0.23
USP54-209ENST00000464635 SPATC1LQ9H0A9 340 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 SH2D4AQ9H788 454 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 INCENPQ9NQS7 918 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 GPHNQ9NQX3 736 aaPredicted RBP13.62□□□□□ -0.23
USP54-209ENST00000464635 LMBRD1Q9NUN5 540 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 ORC3Q9UBD5 711 aaPredicted RBP13.62□□□□□ -0.23
USP54-209ENST00000464635 OGDHLQ9ULD0 1010 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 ELP1O95163 1332 aa13.62□□□□□ -0.23
USP54-209ENST00000464635 H3BQV1 296 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 WDR46O15213 610 aaKnown RBP13.61□□□□□ -0.23
USP54-209ENST00000464635 TRAK2O60296 914 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 JAK2O60674 1132 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 MBD3O95983 291 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 ERCC3P19447 782 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 KIF5BP33176 963 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 FXR1P51114 621 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP54-209ENST00000464635 TFAP4Q01664 338 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 NECAB2Q7Z6G3 386 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 TRMT44Q8IYL2 757 aaKnown RBP13.61□□□□□ -0.23
USP54-209ENST00000464635 TRIM22Q8IYM9 498 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 ANKLE1Q8NAG6 615 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 LZTS2Q9BRK4 669 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 SCAND2PQ9GZW5 306 aaPredicted RBP13.61□□□□□ -0.23
USP54-209ENST00000464635 KANSL2Q9H9L4 492 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 PCDH10Q9P2E7 1040 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 IVNS1ABPQ9Y6Y0 642 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 PFASO15067 1338 aa13.61□□□□□ -0.23
USP54-209ENST00000464635 PRDM1O75626 825 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 HOXC6P09630 235 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 TSPY3P0CV98 308 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 TSPY8P0CW00 308 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 CDC27P30260 824 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 CYP2C19P33261 490 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 ADD1P35611 737 aaKnown RBP13.6□□□□□ -0.23
USP54-209ENST00000464635 SSRP1Q08945 709 aaKnown RBP13.6□□□□□ -0.23
USP54-209ENST00000464635 PLS1Q14651 629 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 LHX8Q68G74 356 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 RCSD1Q6JBY9 416 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 BRAPQ7Z569 592 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 TRPV1Q8NER1 839 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 NUP88Q99567 741 aaPredicted RBP13.6□□□□□ -0.23
USP54-209ENST00000464635 NCOA5Q9HCD5 579 aaKnown RBP13.6□□□□□ -0.23
USP54-209ENST00000464635 HOXC10Q9NYD6 342 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 CFAP45Q9UL16 551 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 ISY1Q9ULR0 285 aaKnown RBP13.6□□□□□ -0.23
USP54-209ENST00000464635 SYNPO2Q9UMS6 1093 aa13.6□□□□□ -0.23
USP54-209ENST00000464635 IGKV6D-41A0A0C4DH26 115 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 PRPF3O43395 683 aaKnown RBP13.59□□□□□ -0.23
USP54-209ENST00000464635 RAD21O60216 631 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 EVI5O60447 810 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 COBLO75128 1261 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 DEXIO95424 95 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 IGHA2P01877 340 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 CAPN2P17655 700 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 ADORA2AP29274 412 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 KRT85P78386 507 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 TMEM132BQ14DG7 1078 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 FAM83BQ5T0W9 1011 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 MCTP1Q6DN14 999 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 MICU3Q86XE3 530 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 C7orf61Q8IZ16 206 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 SHCBP1Q8NEM2 672 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 PRO3102Q9H379 93 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 C11orf49Q9H6J7 331 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 IL17RBQ9NRM6 502 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 NR2E3Q9Y5X4 410 aa13.59□□□□□ -0.23
USP54-209ENST00000464635 VPS37CA5D8V6 355 aaPredicted RBP13.58□□□□□ -0.24
USP54-209ENST00000464635 XBP1P17861 261 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 RESTQ13127 1097 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 MFSD14CQ5VZR4 134 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 NCAPG2Q86XI2 1143 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 MB21D1Q8N884 522 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 REPS2Q8NFH8 660 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 CTCFLQ8NI51 663 aaPredicted RBP13.58□□□□□ -0.24
USP54-209ENST00000464635 C8orf76Q96K31 380 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 KAT14Q9H8E8 782 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 SENP2Q9HC62 589 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 GOPCQ9HD26 462 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 PPP1R9AQ9ULJ8 1098 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 NAP1L2Q9ULW6 460 aaPredicted RBP13.58□□□□□ -0.24
USP54-209ENST00000464635 ADAMTS5Q9UNA0 930 aa13.58□□□□□ -0.24
USP54-209ENST00000464635 RANBP2P49792 3224 aaKnown RBP13.58□□□□□ -0.24
USP54-209ENST00000464635 SMCHD1A6NHR9 2005 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 NDUFB10O96000 172 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 TOP1P11387 765 aaKnown RBP13.57□□□□□ -0.24
USP54-209ENST00000464635 COL6A1P12109 1028 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 CYBAP13498 195 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 NCLP19338 710 aaKnown RBP13.57□□□□□ -0.24
USP54-209ENST00000464635 FUT2Q10981 343 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 MKL1Q969V6 931 aa13.57□□□□□ -0.24
USP54-209ENST00000464635 DDX11Q96FC9 970 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms